PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00161.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 490aa    MW: 54656.8 Da    PI: 5.9341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00161.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30210265359
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              DgynWrKYGqK+vk se+prsYY+Ct+++C+vkkkvers  d++++eitY+g+Hnh 
  Sme2.5_00161.1_g00022.1 210 DGYNWRKYGQKKVKASECPRSYYKCTQRNCSVKKKVERSI-DGHITEITYNGQHNHV 265
                              9***************************************.***************6 PP
2WRKY104.65.4e-33369427159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Sme2.5_00161.1_g00022.1 369 LDDGYKWRKYGQKVVKGTQHPRSYYRCTYSGCNVRKQVERASTDPKAVITTYEGKHNHD 427
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26205267IPR003657WRKY domain
SuperFamilySSF1182907.06E-23207267IPR003657WRKY domain
SMARTSM007744.7E-31208266IPR003657WRKY domain
PfamPF031065.7E-23210264IPR003657WRKY domain
PROSITE profilePS5081122.389210267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-35356429IPR003657WRKY domain
SuperFamilySSF1182901.83E-29361429IPR003657WRKY domain
PROSITE profilePS5081136.139364429IPR003657WRKY domain
SMARTSM007742.3E-38369428IPR003657WRKY domain
PfamPF031062.6E-26370427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEERASEVSF PALTIPPRPS LESFFNTSSF SPGPMSLVSS FLAEQSPSFS KLLAEEECSG  60
DPEGSQRPSG YKQNRPVNLE LAQSPLFMNP SSLSPSVFLN SPGFLSPLQS PFGMSHQQAL  120
AHVTAQAEFS SSYMQMKAED QCYSQVDSGE ELGNVLSTDP KESSWQIKEH LVTGSDNKPL  180
DELGKHFEQP EVSQSENKTS FGTLDKPACD GYNWRKYGQK KVKASECPRS YYKCTQRNCS  240
VKKKVERSID GHITEITYNG QHNHVQPTKQ RKDGSALDNT DFSGVRRDIS THEWTVMNSS  300
DGSSTQMTSE LLVERECDEI ISNLIDVEER HDEPDAKRTK TAVETVALPH VTIADSKIVL  360
QTRSEVDLLD DGYKWRKYGQ KVVKGTQHPR SYYRCTYSGC NVRKQVERAS TDPKAVITTY  420
EGKHNHDIPT VVRNRRTSPG PMSLVSSFLA EQSPSFSKLL AEEECSGDPE GSQLTCGNRV  480
PLYFMLSTLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-35210429877Probable WRKY transcription factor 4
2lex_A5e-35210429877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7405310.0AY740531.1 Capsicum annuum WRKY transcription factor-c (WRKY-c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561364.10.0PREDICTED: probable WRKY transcription factor 3
TrEMBLA0A1U8G0670.0A0A1U8G067_CAPAN; probable WRKY transcription factor 3
STRINGPGSC0003DMT4000036370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-108WRKY DNA-binding protein 4