PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00161.1_g00019.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 420aa    MW: 47017.8 Da    PI: 4.4278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00161.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-194796255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sme2.5_00161.1_g00019.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                             789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-3146103No hitNo description
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
PfamPF008471.1E-134796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2747103IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1947104IPR016177DNA-binding domain
SMARTSM003801.6E-3547110IPR001471AP2/ERF domain
PRINTSPR003676.3E-84859IPR001471AP2/ERF domain
PRINTSPR003676.3E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MARKRRANER LGENNRNDNQ RNVAWDEMVK ETAVAAALGG VRRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSSSS SSTPALPSKI  120
SNLLISRLKA RNNSLAAAAA ATAASSSFDS SEPVAENHNK NKQGEELREE EAYFSDLQYM  180
EYLKDPEDLI TDNNMISNMS SINVSNFTNT LEACSTENDY SVIQPVKSDE NMSGGEINTI  240
VEVDAEEEEN NTDIGLESID FQFVDEIGSS YYYSPFEIAE EINSSETMEQ GMVYGDESSM  300
LTEAMRRMNY ERKFSASLYA FNGITECLKL KLKSGVMQRE RCEQFSRLRN ACKKKEEEKK  360
IDEGIGEKKD SEYSSSETGP SSSSPETGSS SSTISEENTY ESELSLWSSI DLPPICTFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1340103771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562270.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A2G3D9K30.0A0A2G3D9K3_CAPCH; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000034030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-21related to AP2 11