PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00161.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 467aa MW: 52088.6 Da PI: 6.3007

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00161.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.3e-39	113	172	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Sme2.5_00161.1_g00001.1 113 PDKILPCPRCNSMETKFCYFNNYNTSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 172 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.388	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MSEVTASKDP AIKLFGWTIH LPESLAPARE DTRDYSSSAV EVEQDFKDQC DDYNDDNEYL 60 TTRELQDQNP IQPRCDIIKE SPDCYECSTA KTSKSDEEHG KTCNSQERNL KKPDKILPCP 120 RCNSMETKFC YFNNYNTSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHHSHIS 180 VSEALSNATT NFPDETQRPH LTLNGTILTF DTDKPLYESM VSGLNVADKT MQNFSGNGFH 240 KYKEPGIQTG NNGDDHSDGS SVTAVSSKDS DNGLPDTPRQ NCNSFPPHLP CFTGAPWPYI 300 WSSMHYTNAV PLTGYSLPGI SMPFFPATTY WGCTIPGSWN VPWMSPSTTS HNQMPPTSGP 360 NSPTSGKHSR DENVLKSTGT EEEHRKESNP GKRLWFPKSL RIDDPGETAK SPIWETLGIK 420 HEIVDSVGGG LLKAFLPYER KCDAENSNLL QVNPAAMSRS LNFNESS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MSEVTASKDP AIKLFGWTIH LPESLAPARE DTRDYSSSAV EVEQDFKDQC DDYNDDNEYL  60
TTRELQDQNP IQPRCDIIKE SPDCYECSTA KTSKSDEEHG KTCNSQERNL KKPDKILPCP  120
RCNSMETKFC YFNNYNTSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHHSHIS  180
VSEALSNATT NFPDETQRPH LTLNGTILTF DTDKPLYESM VSGLNVADKT MQNFSGNGFH  240
KYKEPGIQTG NNGDDHSDGS SVTAVSSKDS DNGLPDTPRQ NCNSFPPHLP CFTGAPWPYI  300
WSSMHYTNAV PLTGYSLPGI SMPFFPATTY WGCTIPGSWN VPWMSPSTTS HNQMPPTSGP  360
NSPTSGKHSR DENVLKSTGT EEEHRKESNP GKRLWFPKSL RIDDPGETAK SPIWETLGIK  420
HEIVDSVGGG LLKAFLPYER KCDAENSNLL QVNPAAMSRS LNFNESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338444.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	M0ZLI4	0.0	M0ZLI4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003359	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-87	cycling DOF factor 2