PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00151.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 297aa MW: 32940.5 Da PI: 7.2489

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00151.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.6e-40	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s Sme2.5_00151.1_g00002.1 34 HDHSIKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 94 57889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	28	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.966	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDSSSSPSGG DHINNLMTCS RPIIVDQRRL RPPHDHSIKC PRCDSTHTKF CYYNNYSLTQ 60 PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN KKVSSKKSSN NNTNETLAAA TTTNIQEMPF 120 PLHNHHHFMS GGGASTNFGH HGNFILENQA PVIDFMESKY EALVGSTSTH SRNQDLFLGN 180 GDNDIGMMMI SGIGHDDNNI VAQNYPFGMT SMDNGNNFGM LLPYENINHH HEEVQNINNA 240 VDVKPNPKIL SLEWHDNDQL DVNKESSSYG YYSGTGGLGS WTGLMNGYGS SATNPLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-115	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	1e-115	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006344507.1	1e-144	PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBL	M1BJB3	1e-143	M1BJB3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400046598	1e-144	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-35	TARGET OF MONOPTEROS 6