PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00146.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 33581.3 Da PI: 9.7518 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.1e-38 | 80 | 140 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nny+lsqPryfCk+CrryWtkGGalrnvPvGgg+r+n+k+s Sme2.5_00146.1_g00017.1 80 PETALKCPRCESTNTKFCYFNNYNLSQPRYFCKTCRRYWTKGGALRNVPVGGGSRRNNKRS 140 67899***************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 68 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 83 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.161 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAFSSVPFYL DPPNWQHEQA NQQQQQLLGV VDHENPSQLS PVVLPPPVEG GGGGGGGGGS 60 GSIRSGSMTE RARLAKITQP ETALKCPRCE STNTKFCYFN NYNLSQPRYF CKTCRRYWTK 120 GGALRNVPVG GGSRRNNKRS RSKRARTSKS PIRSERSRID PIITSNSTTP ITFPSHLPTP 180 STHLSFLMNT PFHNFNDFNS TQNGLNFGEI QPHEGDATFV DQFRLQQMQQ FSFLSPLEQP 240 SSFYPSYSGF GISHDLENVK VEVDKSSTNS QGMNLQRNNN LRVGQFWTDY NISSTSTSQL 300 L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | RSRSKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186290 | 0.0 | AC186290.2 Solanum lycopersicum chromosome 5 clone C05HBa0131D04, complete sequence. | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346013.1 | 1e-148 | PREDICTED: dof zinc finger protein DOF3.6 | ||||
TrEMBL | M1C5E8 | 1e-146 | M1C5E8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060216 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 8e-40 | OBF-binding protein 3 |