PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00140.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 1098aa    MW: 122515 Da    PI: 6.7756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00140.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-08331424147
                              TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkq 39 
                              r+ W++eE e l+++vkq   +                                               +W+ +a++   gR++ +
  Sme2.5_00140.1_g00010.1 331 RKEWSKEESENLAKGVKQQFQEmllqrsvnllsdedgcsresgdlddviasirdlvitpetmrlflpkvNWDQVASMYLPGRSGAE 416
                              789****************999******************************************************9888****** PP

                              HHHHHHHH CS
          Myb_DNA-binding  40 cksrwqky 47 
                              c+srw+++
  Sme2.5_00140.1_g00010.1 417 CQSRWLNW 424
                              ******98 PP
2Myb_DNA-binding39.61.2e-12484528146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r  WT eEd +l  av+ +G  +W ++a+ +  gRt+ qc +rw k
  Sme2.5_00140.1_g00010.1 484 RREWTDEEDIRLSAAVETFGESNWQLVASVIE-GRTGPQCSNRWIK 528
                              678*****************************.***********76 PP
3Myb_DNA-binding38.82.1e-12538595246
                              SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                              g+W+++Ed++l+ av ++ ++               Wk++a++++ gRt  qc++rw +
  Sme2.5_00140.1_g00010.1 538 GKWSADEDKRLKVAVMLFHPKtwrnigqsvpwrtpIWKKVAQYVP-GRTHVQCRERWVN 595
                              89*****************99************************.***********87 PP
4Myb_DNA-binding44.43.8e-14605646346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               WT+eEd++l+ a+  +G   W+++a++++  Rt++qc+ rw  
  Sme2.5_00140.1_g00010.1 605 EWTEEEDLKLKSAIDAHGYS-WSKVAACVP-PRTDNQCRRRWIV 646
                              7*****************99.*********.9**********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166326425IPR017877Myb-like domain
SMARTSM007171.2E-6330427IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10333349IPR009057Homeodomain-like
CDDcd001670.00237388424No hitNo description
Gene3DG3DSA:1.10.10.602.5E-10398438IPR009057Homeodomain-like
SuperFamilySSF466893.59E-12407475IPR009057Homeodomain-like
PROSITE profilePS512947.548426478IPR017930Myb domain
SMARTSM007170.0018430480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-8439486IPR009057Homeodomain-like
SuperFamilySSF466891.1E-17464535IPR009057Homeodomain-like
PROSITE profilePS5129418.375479534IPR017930Myb domain
SMARTSM007171.1E-11483532IPR001005SANT/Myb domain
CDDcd001671.41E-9486528No hitNo description
Gene3DG3DSA:1.10.10.601.1E-15487537IPR009057Homeodomain-like
PfamPF139211.3E-11487548No hitNo description
PROSITE profilePS500908.838532597IPR017877Myb-like domain
SuperFamilySSF466895.29E-5534572IPR009057Homeodomain-like
SMARTSM007176.2E-9536599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-13538586IPR009057Homeodomain-like
CDDcd001673.33E-6539597No hitNo description
PfamPF002491.8E-5574595IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-23577649IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-20587644IPR009057Homeodomain-like
PROSITE profilePS5129420.44598652IPR017930Myb domain
SMARTSM007173.2E-13602650IPR001005SANT/Myb domain
CDDcd001674.59E-11605648No hitNo description
PfamPF002495.3E-13605645IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MAFDGDDDFS GSDSDDGLHE DMEALRKACL FAGKDADDLQ PSSSTGDVAG VHVAGDDDVT  60
HSVSEASDND DEDDIELVRS IQERFALSTE LLEPISLKPL CSILPSDTEG DVDDFETLRA  120
IQRRFAAYDD ESGNGRKESP SDKFEQVGVT NITSEKETSN NFFVDRTNAE EGFPACVDGT  180
TQIYEGCSND VARSQNRTEG HDSGAENTAV SVSSSCFPKS AHAFLDAIKK NRSCQKVIRD  240
KMIQTEARLE ELKKLKERVK ILKSFQLTCK KRMGRALSQK RDARVQLISL PKQRFSAKGK  300
KLSAIHCGPP ENSHVASYRE ALTHFAVSLN RKEWSKEESE NLAKGVKQQF QEMLLQRSVN  360
LLSDEDGCSR ESGDLDDVIA SIRDLVITPE TMRLFLPKVN WDQVASMYLP GRSGAECQSR  420
WLNWEDPLIK HEGWDLLEEK NLLHAVQQKK MSNWVDISTS LGVCRTPFQC LSHYQRSLNA  480
SIIRREWTDE EDIRLSAAVE TFGESNWQLV ASVIEGRTGP QCSNRWIKSI HPAMKRSGKW  540
SADEDKRLKV AVMLFHPKTW RNIGQSVPWR TPIWKKVAQY VPGRTHVQCR ERWVNSLDPY  600
LKLDEWTEEE DLKLKSAIDA HGYSWSKVAA CVPPRTDNQC RRRWIVLFPD EVPMLKEAKK  660
ISREAFISNF VDREGERPAL RPNDIVPTHK LNYRAGCETT SANKKKKLWP IVTRDDTSPR  720
CDVACEMEKQ HSEGSEDPES SDLIKNCLLS SRDQGCNDAR KSKRPSKLRP GKTQKFTPND  780
KVSEASASSE STIADGNICK RRRISSLVKK KSRTIASASR MVESTAADGN ICKRRRRTSS  840
LVKNKSGESS SSLPNLSSSM TVVEEAESLV QDSRKAKNVM DKRHSASEYD DPCINSQGPP  900
LARPHLDNGT VDLNVGENEN ASTIGFFEKN DVVCTDENAT ESKASDIPGT LQGENYGASG  960
CHKLNKCNQW KNNVKPSIDN LPETADDCMT LASFIHKSRA KVCSSSSTKV ASLHPGKAQS  1020
KAMAGVHSSR SCISGGPDGM DMRTEQECTS SSQISGTEVG DDVPLSFFMG RVKNRELTEV  1080
GDDMPLSLFM GRLKREHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-264346446155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-264346446155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799803KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389740.0AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341558.10.0PREDICTED: uncharacterized protein LOC102578376
TrEMBLA0A0V0IVV70.0A0A0V0IVV7_SOLCH; Putative ovule protein (Fragment)
STRINGSolyc03g119050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-169myb domain protein 4r1