PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00130.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 28188.9 Da PI: 9.7659 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.7 | 8.3e-32 | 35 | 140 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f kv tpsdv+k++r+v+pk++ae++ +g+ +++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD++ Sme2.5_00130.1_g00009.1 35 FNKVVTPSDVGKLNRIVIPKQHAEKYfpldsSGNDKGGLLLNFEDSHGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTIS 120 89*****************************55666889*********************************************** PP EEE-.SS.SEE..EEEEE-S CS B3 82 Fkld.gr.sefelvvkvfrk 99 F++ g+ s+ +l++ ++r+ Sme2.5_00130.1_g00009.1 121 FQRGaGEfSRHRLFIDWHRR 140 **766888888888888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 23 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-31 | 32 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.69E-24 | 33 | 123 | No hit | No description |
SMART | SM01019 | 4.5E-21 | 35 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 35 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-29 | 35 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MDFFGSSKKG EEASSSNNTE LMMMNSSLIE REHMFNKVVT PSDVGKLNRI VIPKQHAEKY 60 FPLDSSGNDK GGLLLNFEDS HGKQWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDTIS 120 FQRGAGEFSR HRLFIDWHRR PTYNHCKYMY GIGDPSASPY YYRTSTSFNN DTTINNMMMR 180 SVPPKGVVLE PRVFNSVPVV QGKVEAKRLR LFGVNMDYTM DIIPSIPTTS SEESSKKGKF 240 FDLDI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-60 | 28 | 141 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-60 | 28 | 141 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352299.2 | 1e-106 | PREDICTED: B3 domain-containing transcription factor NGA3-like | ||||
Swissprot | Q6EU30 | 5e-64 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
Swissprot | Q8LMR9 | 4e-65 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | M1A593 | 1e-105 | M1A593_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015010 | 1e-106 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2817 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-64 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|