PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00128.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 189aa    MW: 21267.9 Da    PI: 8.2131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00128.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-192676256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+tae+Aa+a++ a+++++g+
  Sme2.5_00128.1_g00014.1 26 RYRGVRKRP-WGRFAAEIRDPVK---KARVWLGTFDTAEDAARAYDDAARSFHGA 76
                             7********.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.8542683IPR001471AP2/ERF domain
PfamPF008474.0E-122675IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-222684IPR016177DNA-binding domain
CDDcd000181.75E-192685No hitNo description
Gene3DG3DSA:3.30.730.107.2E-322683IPR001471AP2/ERF domain
SMARTSM003802.4E-362689IPR001471AP2/ERF domain
PRINTSPR003672.6E-112738IPR001471AP2/ERF domain
PRINTSPR003672.6E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPRRKNLDTN GLRSVVLRQS ETDPRRYRGV RKRPWGRFAA EIRDPVKKAR VWLGTFDTAE  60
DAARAYDDAA RSFHGAKAKT NFPILPPYGQ NQFENLHHSR PAESSLSSTV ESSSGVRPLC  120
TVMQPRIEVP RRFPATTMGE CYSDCDSSST VVDDNCIGGV DSYCKDPLPF DLNFPPPSED  180
VHFISPFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212584161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-212590470ATERF1
3gcc_A1e-212590470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275619.14e-89ethylene-responsive transcription factor 7-like
SwissprotQ9LDE47e-31ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HP819e-88A0A0V0HP81_SOLCH; Putative ethylene-responsive transcription factor 7-like
TrEMBLG3K5129e-88G3K512_SOLTU; Ethylene response factor ERF1
STRINGPGSC0003DMT4000360711e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-21ERF domain protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]