PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00128.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 407aa    MW: 45814.2 Da    PI: 9.5033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00128.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.3e-172673148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WTt Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  Sme2.5_00128.1_g00007.1 26 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 73
                             79******************************************9986 PP
2Myb_DNA-binding49.69e-1679122146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g+++ eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
  Sme2.5_00128.1_g00007.1  79 KGAFSLEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 122
                              799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3472173IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-232376IPR009057Homeodomain-like
SuperFamilySSF466893.25E-2925120IPR009057Homeodomain-like
SMARTSM007171.2E-122575IPR001005SANT/Myb domain
PfamPF002499.0E-152673IPR001005SANT/Myb domain
CDDcd001671.98E-102873No hitNo description
PROSITE profilePS5129425.04274128IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2477127IPR009057Homeodomain-like
SMARTSM007171.5E-1578126IPR001005SANT/Myb domain
PfamPF002491.3E-1479122IPR001005SANT/Myb domain
CDDcd001674.73E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAPSGGVNKK NGTSISRNGG GQVLKKGPWT TTEDAILMEY VKKHGEGNWN AVQRNSGLMR  60
CGKSCRLRWA NHLRPHLKKG AFSLEEERLI VELHAKLGNK WARMAAQLPG RTDNEIKNYW  120
NTRLKRRQRA GLPIYPQDIR PQNYQQDQNQ LHHSTNTPFD NHHQNSPLSL LDIFNPSTMK  180
PIRNLIPHQY QFNNNPTSSF LTNTNNINNQ VKFFRDPRLS LSLTLASSMK NSQLSSMVAP  240
VPNNFSQGYS SSMPMPPLQN TYPNFTKPFS AISSNPNGLI LGMGTEHRSI QSSMLKTTTS  300
SDHADNYAIN HGLSRGNSGL LEDLLEESHA LTRGEKIEEN CPIENEDNKG KLVWEEYGLT  360
EEAANAILTE ESTYNFAHKH SEDSSSPNSS SGLDFEKRVF QKPPLYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29241275107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352041.10.0PREDICTED: transcription factor MYB51-like
TrEMBLM1B3950.0M1B395_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000360860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-73myb domain protein 101