PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00125.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LFY
Protein Properties Length: 448aa    MW: 50223.9 Da    PI: 7.5914
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00125.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY604.42.4e-18413751380
                  FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap..........leaaaaaaarklreleelfkayGvryltvakiaelGftvs 76 
                              mdpeafsa+lfkwdpr a+ +pp+rlle  a ++++          + + ++ ++r+l +leelf+ayG+ry+t+akiaelGftv+
  Sme2.5_00125.1_g00013.1   1 MDPEAFSANLFKWDPRGAM-PPPSRLLEPVAPPQPTppplppppqlQPSYSMRSTRELGGLEELFQAYGIRYYTAAKIAELGFTVN 85 
                              9**************9887.666666666655443345666664433333334444466*************************** PP

                  FLO_LFY  77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaag 162
                              tL+dmk+eeldd+m+sls+if +dllvGeryGikaa+rae rrleeee  ++rr       +++ld+lsqeglseepvq++  +  
  Sme2.5_00125.1_g00013.1  86 TLLDMKEEELDDMMNSLSQIFSWDLLVGERYGIKAAIRAEWRRLEEEE--ARRR-----GGSNVLDSLSQEGLSEEPVQQHPAERE 164
                              **********************************************88..5666.....35789**************99655555 PP

                  FLO_LFY 163 sggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknG 248
                              ++g+g  ++e+vaa++    + ++k++++++kr +++   +e++e  e++++e+ +++g +g+erqrehPfivtepgevargkknG
  Sme2.5_00125.1_g00013.1 165 AAGSG--TWEVVAAAAG--GSGRMKQRRRRKKRGTSD---EETEELGEDDTEENMNDGGGGGSERQREHPFIVTEPGEVARGKKNG 243
                              54444..7888888743..333444422233333333...33444444555566677888899*********************** PP

                  FLO_LFY 249 LDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvG 334
                              LDYLf+Ly+qCr+fL+qvq+iakerGekcP kvtnqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvG
  Sme2.5_00125.1_g00013.1 244 LDYLFHLYDQCRDFLIQVQNIAKERGEKCPIKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVG 329
                              ************************************************************************************** PP

                  FLO_LFY 335 awrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChl 380
                              awrqacykplvaiaarqgwd+da+fnahprL+iWYvPtkLrqL h+
  Sme2.5_00125.1_g00013.1 330 AWRQACYKPLVAIAARQGWDVDAIFNAHPRLAIWYVPTKLRQLLHI 375
                              ********************************************97 PP
2FLO_LFY71.81.4e-22389430345386
                  FLO_LFY 345 vaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                              vaiaarqgwd+da+fnahprL+iWYvPtkLrqLCh ers+a+
  Sme2.5_00125.1_g00013.1 389 VAIAARQGWDVDAIFNAHPRLAIWYVPTKLRQLCHSERSNAA 430
                              89*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.2E-1981374IPR002910Floricaula/leafy protein
PfamPF016985.2E-21389430IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDPEAFSANL FKWDPRGAMP PPSRLLEPVA PPQPTPPPLP PPPQLQPSYS MRSTRELGGL  60
EELFQAYGIR YYTAAKIAEL GFTVNTLLDM KEEELDDMMN SLSQIFSWDL LVGERYGIKA  120
AIRAEWRRLE EEEARRRGGS NVLDSLSQEG LSEEPVQQHP AEREAAGSGT WEVVAAAAGG  180
SGRMKQRRRR KKRGTSDEET EELGEDDTEE NMNDGGGGGS ERQREHPFIV TEPGEVARGK  240
KNGLDYLFHL YDQCRDFLIQ VQNIAKERGE KCPIKVTNQV FRYAKKAGAS YINKPKMRHY  300
VHCYALHCLD EDASNALRRA FKERGENVGA WRQACYKPLV AIAARQGWDV DAIFNAHPRL  360
AIWYVPTKLR QLLHILAKLC IALISINKVA IAARQGWDVD AIFNAHPRLA IWYVPTKLRQ  420
LCHSERSNAA AAASSSVSGG VADHLPHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1052193752158PROTEIN LEAFY
2vy2_A1e-1052193752158PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192RRRRKKR
2187192RRRKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1979340.0AF197934.1 Lycopersicon esculentum FLORICAULA/LEAFY-like protein (FALSIFLORA) mRNA, complete cds.
GenBankAF1979350.0AF197935.1 Lycopersicon esculentum mutant FLORICAULA/LEAFY-like protein (FALSIFLORA) mRNA, FALSIFLORA-fa allele, complete cds.
GenBankEF0623570.0EF062357.1 Solanum tuberosum LEAFY/FLORICAULA (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563047.10.0PREDICTED: floricaula/leafy homolog 1 isoform X1
SwissprotQ405050.0FL2_TOBAC; Floricaula/leafy homolog 2
TrEMBLA0A1U8FV460.0A0A1U8FV46_CAPAN; floricaula/leafy homolog 1 isoform X1
STRINGXP_009780578.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-148floral meristem identity control protein LEAFY (LFY)