PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00121.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 1416aa MW: 160093 Da PI: 8.3075 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 464.6 | 5.8e-142 | 993 | 1413 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lLl+cA++vs+g+le+a+ +L ++s+lasp+gd+mqR+a+yf+eALa r++rs++++ykal++++ + +se + + k+f Sme2.5_00121.1_g00003.1 993 LIHLLLTCANHVSAGNLENANIALDQISHLASPNGDTMQRIASYFAEALADRILRSWNGIYKALNSTKLR--VVSEDILVKKMF 1074 689**************************************************************99998..69********** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 +e +P+lk++ ++aNqaI ea+ege+ vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++ +k+ le++++ L++ Sme2.5_00121.1_g00003.1 1075 FEYFPFLKVASVIANQAIIEAMEGEKVVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKQVLEQIAHVLTEE 1154 *****************************************************************....9************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................................... 214 Ae+l+vpf+f+ v+ +le+l++e+Lrvk+gEala+++v+qlh+ll Sme2.5_00121.1_g00003.1 1155 AEKLDVPFQFHQ-VVGKLENLDIEKLRVKTGEALAISSVMQLHTLLahedeppkksplafkhlnglhlqrailnqntlgdllek 1237 ************.7999******************************************************************* PP GRAS 215 ..................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 ++++s+ + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le +l r+s Sme2.5_00121.1_g00003.1 1238 ettnvfspgnesasssplSSTAST--KMDGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYFYAALFDCLEFTLQRTSL 1319 ************887654333333..4699****************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 er kvE++l+g+ei+n+vaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++ll+ ++ +gy+++eesgs+v++W+d Sme2.5_00121.1_g00003.1 1320 ERLKVEKMLFGEEIKNIVACEGGERKERHEKLDKWFQRFDGAGFRNVPLSYYAMLQARRLLQSYSCEGYKIKEESGSVVICWHD 1403 ************************************************************************************ PP GRAS 365 rpLvsvSaWr 374 r+L+svSaWr Sme2.5_00121.1_g00003.1 1404 RALFSVSAWR 1413 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53686 | 8.86E-36 | 594 | 705 | IPR001926 | Tryptophan synthase beta subunit-like PLP-dependent enzyme |
Gene3D | G3DSA:3.40.50.1100 | 9.4E-17 | 613 | 709 | No hit | No description |
Gene3D | G3DSA:3.40.50.1100 | 8.7E-30 | 735 | 913 | No hit | No description |
SuperFamily | SSF53686 | 8.86E-36 | 737 | 916 | IPR001926 | Tryptophan synthase beta subunit-like PLP-dependent enzyme |
PROSITE profile | PS50985 | 58.972 | 967 | 1393 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-139 | 993 | 1413 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1416 aa Download sequence Send to blast |
MIWPSKLTRK VKTPTKVSCF VFAGHKEGLL NTRLYKEEVY RYAQDASFVE KMQKAMRLIC 60 FYIVGEQQIC RTCSLYTRSL LNTRLYKEEV YRYAQDASFV EKMQKAMRLI CFYIVGEQQI 120 CRTCSLYTRT TRNTRFSASQ SGDHFSANPA TRLLVMDVEI KREKKKKVLY AKPKIRWEGL 180 TSALSHEMEE KLINLEAWSS ECNMNSMWDT TAGYIRKVAT EVLGVSRRAF GGRQGDWWWN 240 DEVQGKVKDK KVAYTEWLEC RDEEEKQKLK TAKLPDEWRS TMVPLYKNKG DIKNCNNYRG 300 IKLLSHTMKI WKRVVEMRVR RVISISENQF EFMPGRSTTE AYDKVPRDVL WRCLEMKDVP 360 MAYIKAIKDM YDGAETREEV PWCMLFADDI VFIDDTRTKV NDRLEAWRHA LKSKGFKLSR 420 TKTEYLGCKF SVERDKANFD VRQDDVYQTL AWTKWRLASG VVCDKKIPPK LKCKFYKLVV 480 RPSFLSDKVR NETIREKLEQ QRNGMILSST LSIHCGASSP NLLKEMSKAN FSKEEHVSRF 540 LKRKWALRSP DTKINQIMIS KDGLQQGCEN LGNLSFMNNP QPFMDDHVTR NNRQDPSFYV 600 VRDDLLHPLV NGNKARKLDA LLPLLEDCSV TDVVTCGGCQ SAHAAAVAVS CAERGLKSHL 660 LLRGEQPATL TGYNLISTLY GNVSYVPRSL YAGREEMLSK HAHIVAGNGG LVISLADLEA 720 SLSSHRCGEH SPHMDALTKG SKKVAIINEG AGDAAALLGV VRLVEYLSQD HLFGKDQQLK 780 IIIDAGTGTT AVGFGIGAMC LGLPWEVTAV MLADTIDGYQ KKEESLISEF HRCFTLQLDE 840 QVQTGLEGGL VHWVERSSPR KFGNILKGEV EICRKIAQET GILLDPVYTL AAWELATQVG 900 QEECAKVVML HTGVNGSNLR DIIHLGCGSP KVVSMVSEPP TILCAHGALD GDTDDGSSSV 960 TSSSPLMSHS PSFGGSPYQW LKDLKSEDRG LYLIHLLLTC ANHVSAGNLE NANIALDQIS 1020 HLASPNGDTM QRIASYFAEA LADRILRSWN GIYKALNSTK LRVVSEDILV KKMFFEYFPF 1080 LKVASVIANQ AIIEAMEGEK VVHIVDLNAS EPLQWRALLQ DLSARPEGPP HLRITGVHQQ 1140 KQVLEQIAHV LTEEAEKLDV PFQFHQVVGK LENLDIEKLR VKTGEALAIS SVMQLHTLLA 1200 HEDEPPKKSP LAFKHLNGLH LQRAILNQNT LGDLLEKETT NVFSPGNESA SSSPLSSTAS 1260 TKMDGFLHAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL YFYAALFDCL EFTLQRTSLE 1320 RLKVEKMLFG EEIKNIVACE GGERKERHEK LDKWFQRFDG AGFRNVPLSY YAMLQARRLL 1380 QSYSCEGYKI KEESGSVVIC WHDRALFSVS AWRCRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-39 | 977 | 1415 | 2 | 380 | Protein SCARECROW |
5b3h_D | 2e-39 | 977 | 1415 | 2 | 380 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |