PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00121.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 17973.5 Da PI: 10.4548 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 91 | 141 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+WvAeIrd + k++r +lg+f++ eeA a+++ +++g Sme2.5_00121.1_g00001.1 91 KKYRGVRQRK-WGKWVAEIRDSR---KNARLWLGTFDSSEEATLAYDKTTIEIRG 141 59*******9.**********43...36*******************98777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.52E-27 | 91 | 147 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-19 | 92 | 148 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-26 | 92 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-26 | 92 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-14 | 92 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.824 | 92 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MHRNHYQEWK DQGHFKGDNP VLTNFLHKTT CIEITIKNGK TKATSKAISS KEKKDNKMLQ 60 ENVKKYREKK DNKMLQENGE ERHKDAPKYV KKYRGVRQRK WGKWVAEIRD SRKNARLWLG 120 TFDSSEEATL AYDKTTIEIR GIDALTNIIN PPA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 91 | 148 | 4 | 62 | ATERF1 |
3gcc_A | 1e-18 | 91 | 148 | 4 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885736.1 | 5e-33 | ethylene-responsive transcription factor ERF069-like | ||||
TrEMBL | M1DM95 | 1e-35 | M1DM95_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091285 | 2e-36 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.1 | 9e-23 | ERF family protein |