PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00100.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 537aa    MW: 59959.9 Da    PI: 5.1434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00100.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.41.2e-1371685372374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +e+L++cA+a+++++l  a++l+++l++ +s  g+p+qRl ay++e+L arla+s+s++ykal+++e +    +e +++++l++e+
  Sme2.5_00100.1_g00011.1 168 KEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---NVELFSYMHLLYEI 250
                              679*****************************************************************9...89999********* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P++kf++l aN aI++a++ e+ +HiiDf+i qG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++
  Sme2.5_00100.1_g00011.1 251 CPYFKFGYLSANGAIVDAMKDENSIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGQRLSSIAAS 336
                              **************************************************************998899999*************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpf+f++ va +++d+e+e+L+v+pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+++F+ rf
  Sme2.5_00100.1_g00011.1 337 CNVPFDFHP-VAASCSDVEIEHLKVRPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTAPFFPRF 421
                              *********.799************************************************************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              le+l+yy ++f+s+++ lpr+++eri+vE+++l+reivn++acegaer+erhe lekWr+r+++aGFkp+pls+++++++k+ll++
  Sme2.5_00100.1_g00011.1 422 LETLNYYLSIFESIDVALPRDHKERINVEQHCLAREIVNILACEGAERVERHELLEKWRSRFSMAGFKPYPLSSSVNATIKTLLEN 507
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++  y+++e++g+l+lgW++r L++ +aW+
  Sme2.5_00100.1_g00011.1 508 YYQS-YTLDERNGALYLGWMNRDLIASCAWK 537
                              **55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.216141518IPR005202Transcription factor GRAS
PfamPF035144.0E-135168537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MRPSQNPEDI NKFDSFYNQP IEYQDSFFLP SINNPNNSQS FYADVSTLKP VQHCYVESST  60
GNSSELVSDS PPIVNFNPMM HQGSDSCRSD MRHSPDDTFL SSGNSSCYTS DVTDLKHKLR  120
ELETAMLGPD SESLESYNTI PLATANQVTS ESDKLIGMME MMPSGDVKEV LIACAKAIAE  180
NNLITAEWLM SELRTVVSVC GSPIQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPTNVEL  240
FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK DENSIHIIDF QIAQGSQWIT LIHALAARPG  300
GPPRIRITGI DDSTSAYARG GGIEIVGQRL SSIAASCNVP FDFHPVAASC SDVEIEHLKV  360
RPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES NTNTAPFFPR  420
FLETLNYYLS IFESIDVALP RDHKERINVE QHCLAREIVN ILACEGAERV ERHELLEKWR  480
SRFSMAGFKP YPLSSSVNAT IKTLLENYYQ SYTLDERNGA LYLGWMNRDL IASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6817453626378Protein SCARECROW
5b3h_A2e-6817453625377Protein SCARECROW
5b3h_D2e-6817453625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082105.10.0scarecrow-like protein 21
RefseqXP_015082106.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLM1C0F30.0M1C0F3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000571110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]