PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00099.1_g00002.1
Common Name14.EGGPLANT.8
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 546aa    MW: 60363.5 Da    PI: 5.6653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00099.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.43.4e-1011865452374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              v+ L+++Ae+++++ ++ a+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs+
  Sme2.5_00099.1_g00002.1 186 VDELIRFAECFETNAFQVAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPSSSSDVIQTIKSYKIFSN 265
                              678*************************999************************......778888999999************* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
                              +sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++f
  Sme2.5_00099.1_g00002.1 266 ISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQF 349
                              ***********************************************877666689***********66..99999********** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnses 252
                              A+el++ fe+++++ +++e l+++++++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +++ s
  Sme2.5_00099.1_g00002.1 350 ARELNIGFEIDFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNDLRRISPNVVVHVDSEglMGYGAMS 426
                              ********************************************98......3...48*******************87788**** PP

                     GRAS 253 Flerflealeyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                              F + +++ le+ys+l++sl +a+++  +  ++++k+E+++l ++iv++v + g++        ++W++++ +aGF+pv ls++a  
  Sme2.5_00099.1_g00002.1 427 FRQTVIDGLEFYSTLLESLeAANIGGGNcgDWMRKIENFVLFPKIVDMVGAVGRR------GGGSWKDAMVAAGFRPVGLSQFADF 506
                              *******************88999999999************************8......99*********************** PP

                     GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  Sme2.5_00099.1_g00002.1 507 QADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 545
                              **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.423159525IPR005202Transcription factor GRAS
PfamPF035141.2E-98186545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLVSSN NNNNNNLRNV TFPVAVTNGP NLCYEPKSVL DLRRSPSPIV  60
EKQIVTTNPD LSALCGGEDP LQLGDHVLSN FEDWDSLMRE LGLHDDSASL SKTNPPLSLA  120
QTESLTQFHN LSDFSGDSTQ FANPDFSFSD STFPQQFPAV NQGSFINALD LSGDIHQNWN  180
VGFDYVDELI RFAECFETNA FQVAHVILAR LNQRLRSAAG KPLQRAAFYF KEALQAQLAG  240
STRQTRPSSS SDVIQTIKSY KIFSNISPIP MFSSFTANQA VLEAVDGSML VHVIDFDIGL  300
GGHWASFMKE LADKAECRKA NAPVLRITAL VPEEYAVESR LIRENLTQFA RELNIGFEID  360
FVLIRTFELL SFKAIKFMEG EKTAVLLSPA IFRRVGSGFV NDLRRISPNV VVHVDSEGLM  420
GYGAMSFRQT VIDGLEFYST LLESLEAANI GGGNCGDWMR KIENFVLFPK IVDMVGAVGR  480
RGGGSWKDAM VAAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA  540
TSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-2719354426377Protein SCARECROW
5b3h_D8e-2719354426377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177910.0EF517791.1 Solanum melongena BAC 77N19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363143.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-147SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA9XLD40.0A9XLD4_SOLME; Uncharacterized protein
STRINGPGSC0003DMT4000330370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-149GRAS family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.
    Genetics, 2008. 180(1): p. 391-408
    [PMID:18723883]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]