PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00097.1_g00023.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 302aa    MW: 34748.7 Da    PI: 7.0753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00097.1_g00023.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174792147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Sme2.5_00097.1_g00023.1 47 RGHWRPHEDSKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 92
                             899*****************************.***********996 PP
2Myb_DNA-binding56.28.1e-1899142146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r+++T+eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Sme2.5_00097.1_g00023.1  99 RKAFTEEEEERLLTAHKMYGNK-WSMIARLFP-GRTDNGVKNHWHV 142
                              789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6854293IPR017930Myb domain
SMARTSM007171.2E-144695IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-2847140IPR009057Homeodomain-like
PfamPF002496.3E-164792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2648100IPR009057Homeodomain-like
CDDcd001674.53E-135091No hitNo description
PROSITE profilePS5129425.55794148IPR017930Myb domain
SMARTSM007174.4E-1498146IPR001005SANT/Myb domain
PfamPF002492.2E-1499141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-21101147IPR009057Homeodomain-like
CDDcd001674.50E-6110141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNFLIPCAED KFKDETEGLV DLIGIKENNY NIYNDNNNNG GTKLCARGHW RPHEDSKLKE  60
LVAQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRK AFTEEEEERL LTAHKMYGNK  120
WSMIARLFPG RTDNGVKNHW HVIMARKHRE QNSVYRRRKT SNLQQIIAPN NIQSNSTISS  180
NNNIVDDLQS DSTCTDLSLT PSSSKAITHP FLMRRFNHHH VEHQGIIDSN KGLYGKEPLI  240
AKSVEDEGHY HNHQYYHGNL SDTNSEISAS ESVANNMTNI VKIYEEEEEK IPFIDFLGVG  300
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32411471107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754495e-94HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755225e-94HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055263.11e-165transcription factor MYB54
SwissprotQ5NBM82e-75CSA_ORYSJ; Transcription factor CSA
TrEMBLK4D3191e-164K4D319_SOLLC; Uncharacterized protein
STRINGSolyc10g081320.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-73myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]