PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00091.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 615aa    MW: 67484 Da    PI: 4.8018
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00091.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.77.2e-1092476142373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + L+ecA  ++++d e++ + L rl+e++s++gdp+qR+ +yf+eAL +rl++   +  ++ +      ++ +e + ++k+f+++
  Sme2.5_00091.1_g00001.1 247 LKSLVECAS-LAESDPENVVKSLIRLKETVSQQGDPTQRVGFYFLEALYNRLSS--CQAERTPTIFG---TTPEELTLSYKAFNDA 326
                              5789****9.566699999999********************************..22222223333...346789999******* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAe 170
                              +P+ kf+hltaNqaIlea+e+  r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+
  Sme2.5_00091.1_g00001.1 327 CPYSKFAHLTANQAILEATEKVMRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAASLLATGNRLRDFAK 412
                              *************************************************88777*********877788999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               l+++fef++ + + +++l+ +++r++p+E laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl+r
  Sme2.5_00091.1_g00001.1 413 LLDLKFEFEP-ILTPVQELNGSSFRIEPDEILAVNFMLQLYNLLDETNVGVK---TALNLAKSLNPSIVTLGEYEVNLNDVGFLQR 494
                              **********.799******************************88877777...9****************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvace.gaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              f +al+yys++f+sl+ +l r+s er+ vEr +lgr+i  +v    g+ rre +e +e+Wre +e+aGFkpv+ls++a +qak ll
  Sme2.5_00091.1_g00001.1 495 FKNALKYYSTVFESLDPSLTRDSPERVQVERLILGRRIAGAVGLDdGRIRRECMEDKEHWRELMEAAGFKPVALSHYAISQAKILL 580
                              ******************************************8651666************************************* PP

                     GRAS 342 rkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                               +++ s  + + ++   ++ l Wkd+pL++vS+W
  Sme2.5_00091.1_g00001.1 581 WNYNySSSFGLIDSAPGFLsLAWKDNPLLTVSSW 614
                              ****9999999888777766************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014472.88E-5174184No hitNo description
PROSITE profilePS5098557.716220593IPR005202Transcription factor GRAS
PfamPF035142.5E-106247614IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ QQQFFGVNPL CLNPWTSNHQ  60
TLTTSPTIGY GLTGSGFADP FQVAGGTDGG EPGFQFPNLE HHSTGFRFAD FGGGPGGEFD  120
SDEWMESLIG GGDSTGSSNL HSGCDAWQTS SEFTTLYGDP FSSCPNRLSI GSSPPPPPPP  180
PPPPSDFNGV IFSETQKNLN SLQPQTSPWV PPSSSPPVVQ LSCKEPKVVS VDVPCSSPEI  240
FSSKPLLKSL VECASLAESD PENVVKSLIR LKETVSQQGD PTQRVGFYFL EALYNRLSSC  300
QAERTPTIFG TTPEELTLSY KAFNDACPYS KFAHLTANQA ILEATEKVMR IHIVDFGIVH  360
GIQWAAFLQA LATRSAGKPV SVRISGIPSV VLGNSPAASL LATGNRLRDF AKLLDLKFEF  420
EPILTPVQEL NGSSFRIEPD EILAVNFMLQ LYNLLDETNV GVKTALNLAK SLNPSIVTLG  480
EYEVNLNDVG FLQRFKNALK YYSTVFESLD PSLTRDSPER VQVERLILGR RIAGAVGLDD  540
GRIRRECMED KEHWRELMEA AGFKPVALSH YAISQAKILL WNYNYSSSFG LIDSAPGFLS  600
LAWKDNPLLT VSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1442436151375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340610.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM1B7420.0M1B742_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000385740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein