PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00090.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 109aa    MW: 11772.3 Da    PI: 10.4718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00090.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.74e-152431054
                      AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                             +++g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++
  Sme2.5_00090.1_g00005.1  2 RSWGKWVSEIREPRK---KSRIWLGTYPTPEQAARAHDVAALSIK 43
                             57**********843...6**********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.414152IPR001471AP2/ERF domain
SMARTSM003808.1E-23158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-25153IPR001471AP2/ERF domain
CDDcd000181.85E-24154No hitNo description
PIRSFPIRSF0381239.3E-151105IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541719.15E-17253IPR016177DNA-binding domain
PfamPF008475.5E-10243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRSWGKWVSE IREPRKKSRI WLGTYPTPEQ AARAHDVAAL SIKKDSSILN FPHLINSLPR  60
PISLSPTDVQ AAAAKAAAME DPSSVSSSSS VDSIEKITSA SDIGIGRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-162562176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596664.11e-47PREDICTED: dehydration-responsive element-binding protein 3-like
RefseqXP_016486086.11e-47PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-40DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4BB913e-46A0A1S4BB91_TOBAC; dehydration-responsive element-binding protein 3-like
STRINGXP_009596664.14e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]