PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00086.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 358aa MW: 39511 Da PI: 5.2165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g Sme2.5_00086.1_g00004.1 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 231 59******9.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.03E-32 | 181 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 182 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-37 | 182 | 245 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 182 | 240 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 182 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-14 | 183 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAAAMDFWNS ASVDLQSSLE PITSGGELME ALEPFMKSAS PSPSPSPSTF PSTSSDFQSF 60 PYFPPTTPNP TISYPYTSSF YPISQPTMTS EVCSTSTETN SHIFSSGFSG YGMEQQGPIG 120 LNHLTPIQIQ QIQAQINFQN QQQQQQQQMM LQNAHHASSM NFLAPKPVPM KQSGSPPKPT 180 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYMLR GDFARLNFPQ 240 LRHNGGDFGE YNPLHSSVDA KLKDICQSLA QGKSIDSKKK KTKGSSASAS TVVKMEEEES 300 KVTEVGSESD GSGSGSGEAS PVTELTFPEF TEEESTWDMA ENFLLQKHPS YEIDWASL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 181 | 247 | 4 | 70 | ATERF1 |
3gcc_A | 7e-22 | 181 | 247 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN711507 | 0.0 | JN711507.1 Solanum tuberosum dehydration-responsive element-binding protein DREB4 (DREB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354001.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 3e-80 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | M1AK92 | 1e-171 | M1AK92_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024508 | 1e-171 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-52 | related to AP2 4 |
Publications ? help Back to Top | |||
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