PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00083.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 378aa    MW: 41671.8 Da    PI: 5.0545
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00083.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.51.4e-05149209154
                              TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                              +rkRt +++eq+   e++  +++ +  ++++ e  A kl     ++t++q k+W  Nr+a+
  Sme2.5_00083.1_g00011.1 149 KRKRTIMNDEQISLVEKALMEEPDMqrNKASLESWAVKLsahgsEVTKSQLKNWLNNRKAR 209
                              79******************977771155678999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-6135212IPR009057Homeodomain-like
SuperFamilySSF466891.16E-5138212IPR009057Homeodomain-like
PROSITE profilePS5007110.965146213IPR001356Homeobox domain
SMARTSM003895.1E-4148217IPR001356Homeobox domain
CDDcd000861.02E-4149212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGVGVELVSD LAYRFQEVQN LGGYLPPQLR EVPLDLNNIS SNSREDILDN SSLQRLNQLN  60
SRINDEGQSG EAGKKGEMTE HERFKAISIE VKGIETQNVE TSGSDSSSTR SRHPTDQVGK  120
VEQMNCNGPG EVREDEMVEA QHEEKQQRKR KRTIMNDEQI SLVEKALMEE PDMQRNKASL  180
ESWAVKLSAH GSEVTKSQLK NWLNNRKARL ARAAKDGRML SEGDTLDKQG GLLTLPPCDS  240
PGSPVEDVGI LSAARENAQR VTGLAPSSTC LTENTTAVPA ASSESAKCVA GDYVVLINEK  300
AEEIGRGKVC QVSGKWYQRD LEELGTCVVD VIDLKVERTA KLPYPSELTG ASFDQAERKF  360
GFMRVLWQSS KLVVLPAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144630.0AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088553.10.0nodulin homeobox isoform X1
RefseqXP_015088556.10.0nodulin homeobox isoform X3
TrEMBLA0A3Q7I7000.0A0A3Q7I700_SOLLC; Uncharacterized protein
STRINGSolyc09g074330.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA784457