PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00072.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 294aa    MW: 33425.1 Da    PI: 6.9245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00072.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-192978255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr++  +g+WvAeIr+p++   r r +lg+f taeeAa a+++a+++l+g
  Sme2.5_00072.1_g00009.1 29 EYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATAEEAAMAYDEAARRLYG 78
                             69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-302887No hitNo description
PROSITE profilePS5103222.7612986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-302987IPR001471AP2/ERF domain
SMARTSM003802.5E-352992IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-212987IPR016177DNA-binding domain
PfamPF008474.6E-132978IPR001471AP2/ERF domain
PRINTSPR003673.1E-103041IPR001471AP2/ERF domain
PRINTSPR003673.1E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDSYRRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RSRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHMRA NFNPLNKSQK FKWFSSINNN FVSSLIPNST  120
GLLNLTAQPS VHVIHQRLEE LKRTEAAAAA SSSSIGTNPK NEITIPQVIK EKEDEFSSHN  180
NVTVRADQTE KPQIDLNEFL QQIGILKRDD HHHQQQQQQP DKNQEHDHSS FTESGISLKD  240
DISIAHLFGD TTSYNWDTLS AITGIEDHEA TGTEANSFYN VNDELMFSSS IWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-156HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249756.11e-177dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-74DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLM1C6S81e-168M1C6S8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609701e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-63ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]