PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00065.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 357aa    MW: 41699.4 Da    PI: 4.9565
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00065.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.4e-36381302103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye ++d++++++isws  +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F 
  Sme2.5_00065.1_g00020.1  38 FLTKTYEFVDDQNTNDVISWSIGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFAHEGFL 114
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+++ll++i+r+k++
  Sme2.5_00065.1_g00020.1 115 RGQRHLLKTIRRRKTS 130
                              *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3732122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-3333127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDPNFSAQIK EDFHGSNEPS MWIPQPMEGL HGNGPPPFLT KTYEFVDDQN TNDVISWSIG  60
NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK VNPDQWEFAH EGFLRGQRHL  120
LKTIRRRKTS NFHPGQASNQ GIDSYIEFGK LDIDGEIDRL KREKQDLMME LVELKRHQQT  180
TKSHIKAMEE KLKRTESKQQ QMMNFLAKAM QNPRKVLEEE IRNKRKRQID HQGPSNVNVL  240
ELGHSDGNFN IKLEPHEYYY GEMSGFDDLE LERSLVMSMQ GGPSGNTTNI EEDYNIENEY  300
YMEKLQGENS TIDHEGFWED LLNENVEDHE INLLEENEDD HVDVLAHQLG FLGSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-253613018123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-153HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363482.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-110HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1A7S20.0M1A7S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000165110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B