PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00047.1_g00017.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 281aa MW: 30200.4 Da PI: 8.9968

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00047.1_g00017.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	32	91	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Sme2.5_00047.1_g00017.1 32 DGAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRLS 91 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	25	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
METTQWSTQE IGVVKPSMGA EIMNKKVRPV KDGAINCPRC NSTNTKFCYY NNYSLTQPRY 60 FCKTCRRYWT EGGTLRNVPV GGGSRKNKRL SSSSQKLPDL NPNPNNHVPG NHQNPDNIVI 120 GSGQDLSLGF RTGPHDHHTS FHGVIPQFLD GSNHGNNHLG STPISALDLL RSGIASRGFT 180 SFISSPSTPD LNALYSSSFP FQELKPNVGS TDHAVASLNN YSSGGAGCIE NGGATIMFSL 240 GGLKQLSSTN EAHHHQTKGQ ENNSTAGLYW NGMLSGTTGG S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-139	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339731.1	1e-155	PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
TrEMBL	A0A3Q7ELV1	1e-143	A0A3Q7ELV1_SOLLC; Uncharacterized protein
TrEMBL	M0ZGK7	1e-143	M0ZGK7_SOLTU; Uncharacterized protein
STRING	Solyc01g096120.2.1	1e-144	(Solanum lycopersicum)
STRING	PGSC0003DMT400000349	1e-144	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-53	Dof family protein