PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00036.1_g00025.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 558aa MW: 62531.2 Da PI: 4.3503

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00036.1_g00025.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.8e-08	260	307	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + W+ a +++ R++++++s+++++ Sme2.5_00036.1_g00025.1 260 KWSEEEEELFQEVVLSNPASlgknFWNHLAIEFP-SRSREELVSYYFNV 307 8***********6654445555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-4	252	318	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-4	257	310	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	260	307	IPR001005	SANT/Myb domain
CDD	cd00167	0.00283	260	308	No hit	No description
PROSITE profile	PS50090	6.168	260	308	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MVQKRPFSEE DLYEVSSKQP RHEPSSQVSV LELSCEAVAV AAYASGGDDG NSLRIIPDAN 60 KKFNSHNVDE VLFSSEKETE MGIHGSASNS SWPTSSTSEE DNRPDEPFHI STSPEYYYFD 120 HPFRAAALHR EMYSSILSNP QKMVPIGPDF QAELPEWAPY SYKNKPCIEG LHESLSPPPQ 180 AGENKLAGRT IILMPNMELL ADHIENIGET TVECSCEDIG SIRCVRLDII QAREKLKLAL 240 GEEAFVRLGF CDTGEVVAEK WSEEEEELFQ EVVLSNPASL GKNFWNHLAI EFPSRSREEL 300 VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WHDVVDDADE EAKMTDEDED SVVESPAYHN 360 DLSYNMIHEE HDRRTYDEDV GEATWEDYRP VNCGSRKIFT DVEESCPGKL FDGNSSYKLS 420 MQTQDHGLSN EAVEQEVQGG SCIADVAGVT SEASLRKINN AKHLVSDIAG IGSGTKHESL 480 LEPCNGKEWD VGYWSCARNE VDFLPTHTMI EEVFGDGACI YKSRDALGLS FSLTLVSLST 540 KRKEKGGVVL LFRGLAKF

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MVQKRPFSEE DLYEVSSKQP RHEPSSQVSV LELSCEAVAV AAYASGGDDG NSLRIIPDAN  60
KKFNSHNVDE VLFSSEKETE MGIHGSASNS SWPTSSTSEE DNRPDEPFHI STSPEYYYFD  120
HPFRAAALHR EMYSSILSNP QKMVPIGPDF QAELPEWAPY SYKNKPCIEG LHESLSPPPQ  180
AGENKLAGRT IILMPNMELL ADHIENIGET TVECSCEDIG SIRCVRLDII QAREKLKLAL  240
GEEAFVRLGF CDTGEVVAEK WSEEEEELFQ EVVLSNPASL GKNFWNHLAI EFPSRSREEL  300
VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WHDVVDDADE EAKMTDEDED SVVESPAYHN  360
DLSYNMIHEE HDRRTYDEDV GEATWEDYRP VNCGSRKIFT DVEESCPGKL FDGNSSYKLS  420
MQTQDHGLSN EAVEQEVQGG SCIADVAGVT SEASLRKINN AKHLVSDIAG IGSGTKHESL  480
LEPCNGKEWD VGYWSCARNE VDFLPTHTMI EEVFGDGACI YKSRDALGLS FSLTLVSLST  540
KRKEKGGVVL LFRGLAKF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238568	0.0	AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345157.1	0.0	PREDICTED: uncharacterized protein LOC102600665
TrEMBL	M1CA30	0.0	M1CA30_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400063109	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25