PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00036.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 419aa MW: 46240.9 Da PI: 7.65 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.3 | 4.3e-16 | 202 | 248 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Sme2.5_00036.1_g00016.1 202 VHNQSERRRRDRINQRMKALQRLVPNA-----NKTDKASMLDEVIDYLKQLQ 248 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-19 | 195 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-19 | 196 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.835 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-13 | 202 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-9 | 203 | 252 | No hit | No description |
SMART | SM00353 | 4.2E-17 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MLNFIEKFRS SKCEEVAELT WEKGQLGMHG LGGILSISQA KQTLGRTGDT LESIVHQATC 60 HGKNQTSIHQ NYDQNDDQDL KIEELCSGGK WGESSQQMAP PRATLLAKKR MRPSESDPQY 120 GRAEDHEHTE RSACASASTT FCKENDTTMV TWPSFDESSR SIKSKTTCDE DSACHGGGSE 180 NKEEEHETRR SNSSRRSRAA AVHNQSERRR RDRINQRMKA LQRLVPNANK TDKASMLDEV 240 IDYLKQLQAQ VQLMSSTSRN IAPQMMMPLG MHQHIQMSLL ARMGVGVGLG MGMGMFDMTA 300 LARAVAAAST TTSHQSLPTH PLIHPNQMTA PTNNIPFIPP GAFALQPAAP SIIPSDTQAN 360 TVARANAVTP DAYKAFLPQS MDMEYLNNMA ALYRQQLANQ SAQITGSKLN QGDQTDHRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 211 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563315.1 | 0.0 | PREDICTED: transcription factor UNE10 isoform X1 | ||||
TrEMBL | A0A1U8FWY3 | 0.0 | A0A1U8FWY3_CAPAN; transcription factor UNE10 isoform X1 | ||||
STRING | Solyc03g115540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61270.1 | 4e-31 | phytochrome-interacting factor7 |