PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00033.1_g00028.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 277aa    MW: 30967.7 Da    PI: 6.0448
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00033.1_g00028.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.96.1e-2297157257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              r+R+t+t+ ql++Le+ Fe+ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Sme2.5_00033.1_g00028.1  97 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 157
                              89*****************99**************************************97 PP
2Wus_type_Homeobox101.75.1e-3397159365
        Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  Sme2.5_00033.1_g00028.1  97 RQRWTPTPMQLQILERIFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 159
                              89***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.33793158IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1893163IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1995163IPR009057Homeodomain-like
SMARTSM003892.1E-1595162IPR001356Homeobox domain
PfamPF000469.9E-2097157IPR001356Homeobox domain
CDDcd000861.91E-1697159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEWEKQQQQQ QPPVSAAQTA EEMNGAVSGG GGMFVKVMTD EQMEVLRKQI AVYATICEQL  60
VDLHKSMASQ HDLAGARLGN LYCDPLVTSA GHKITGRQRW TPTPMQLQIL ERIFEQGNGT  120
PSKQKIKEIT SELSQHGQIS ETNVYNWFQN RRARSKRKQQ VAATSHTELE VETEVESPNE  180
KKTKPEDLQS SHLPTSMAED LGYEKPDVSS GMHSLDPRTS KPEPMFPSDG SSKPAASYGQ  240
MSFYGMSNPR MDQLMGKMEV PGSYHPYLHA DDYNMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154500.0AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340846.10.0PREDICTED: WUSCHEL-related homeobox 8
SwissprotO817882e-85WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLM0ZMN10.0M0ZMN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-86WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]