PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00029.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 324aa    MW: 35866.7 Da    PI: 10.0426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00029.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.2e-32253310359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Sme2.5_00029.1_g00022.1 253 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 310
                              99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-19203249IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33240310IPR003657WRKY domain
PROSITE profilePS5081131.054246312IPR003657WRKY domain
SuperFamilySSF1182903.79E-27248310IPR003657WRKY domain
SMARTSM007742.7E-38251311IPR003657WRKY domain
PfamPF031062.8E-27253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAVELMMDYR NTRNTNCINF VTQLEEKSVV QEAASGLESV EKLIRLLSET QSQQIQQQNK  60
SPMEIEMVAD AAVTKFKKVI SLLDRNRTGH ARFRRAPLAG TTTSPSPSNS SKDFGDTKVY  120
SPTPIQQVPL ISHDHFNPLV PKTISFSYSP EMSRTNSFNI SSLTGETESK QHSSPNSAFQ  180
ITNLSSQVSN SAGKPPLSSA SLKRKCSFSE NALSGKCSGS SGRCHCSKRR KLRLKRVIRV  240
PAISMKLADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RALDDPTMLI  300
VTYEGEHNHS LSVAETSSLI LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22239311273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339860.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX02e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0V0HVF20.0A0A0V0HVF2_SOLCH; Putative WRKY transcription factor 15-like
STRINGPGSC0003DMT4000642560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-89WRKY DNA-binding protein 7