PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00029.1_g00016.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ERF

Protein Properties

Length: 167aa MW: 18420.7 Da PI: 8.3159

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00029.1_g00016.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	28	77	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Sme2.5_00029.1_g00016.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 77 59***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.2E-36	28	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.9E-30	28	86	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.904	28	85	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	29	40	IPR001471	AP2/ERF domain
Pfam	PF00847	8.9E-11	29	77	IPR001471	AP2/ERF domain
CDD	cd00018	6.59E-27	29	87	No hit	No description
SuperFamily	SSF54171	1.11E-20	29	86	IPR016177	DNA-binding domain
PRINTS	PR00367	3.2E-11	67	87	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MEVGGGGQSG VAASSGVCCG GKRKNERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST 60 PVAAARAYDT AVYYLRGPSA RLNFPELLVG DGGLNDLSAA SIRKKAIEVG AQVDAVQNSL 120 ATHHHDNPQQ KEHCDTASPS ELKPCWFQEK PDLNLKPEPE DPEVDYW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-15	29	92	15	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN711506	0.0	JN711506.1 Solanum tuberosum dehydration-responsive element-binding protein DREB3 (DREB3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339868.1	1e-114	PREDICTED: ethylene-responsive transcription factor RAP2-10-like
Swissprot	Q9FH94	1e-51	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A0V0INJ8	1e-113	A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like
TrEMBL	M0ZXP8	1e-113	M0ZXP8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400010228	1e-114	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	5e-54	DREB and EAR motif protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]