PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00023.1_g00025.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 410aa    MW: 47368.9 Da    PI: 5.0734
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00023.1_g00025.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34501412102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Flkk++e+++d++++++isws+n+nsfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F+
  Sme2.5_00023.1_g00025.1  50 FLKKTFEMVDDPNTDSIISWSNNQNSFVVWDPHSFSIHLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQ 126
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              kgkk+ll +ikr+k+
  Sme2.5_00023.1_g00025.1 127 KGKKHLLINIKRRKQ 141
                              *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5346139IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3446139IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3746139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-3050139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-185073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-18101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MMEEQIDLKM NVNGGLLEVK EEPVIFVDED DCDSLAKPLE GLRDVGPPPF LKKTFEMVDD  60
PNTDSIISWS NNQNSFVVWD PHSFSIHLLP KHFKHNNFSS FIRQLNTYRF RKIDSDRWEF  120
ANEGFQKGKK HLLINIKRRK QYPQQGGGGG SAKSDGSEAA EIEKLKKDHN ALRMEILRLK  180
QQQESTDSCL ATMKERLQNS ETRQKYMVIF MAKTFKNPLF VQHLVEKMKQ GKKRKLCDAQ  240
FQEEYTTIKS EIQTLFSCDD SSNTTPVEEQ KPDTVSENYI LWEKLMEDDM ICENGAETDK  300
YQSEIVLELE DLISKPPECS EDLALQPYKI EQEWEMVSFS LQRGSVVGAI NLLFLTFGNP  360
NPFVELEWKV RTGTAIRNTW VTVYSTMFGV RLDLGMAIRN AWLTYAISVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-224813927129Heat shock factor protein 1
5d5v_B5e-224813927129Heat shock factor protein 1
5d5v_D5e-224813927129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-64HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-64HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357708.10.0PREDICTED: heat shock factor protein HSF30-like
TrEMBLM1D6700.0M1D670_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000827520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-77heat shock transcription factor A2