PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00022.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 165aa    MW: 18725.7 Da    PI: 6.1289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00022.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-19752251
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                             +y+GVr+++ +g+Wv+eIr+ps    ++r++lg+f tae+Aa+a+++a++
  Sme2.5_00022.1_g00009.1  7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETAEDAARAYDEAAR 52
                             69******9.**********944...5*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-33666No hitNo description
PROSITE profilePS5103221.048764IPR001471AP2/ERF domain
SMARTSM003801.7E-40770IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-21766IPR016177DNA-binding domain
PfamPF008471.3E-11752IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-33765IPR001471AP2/ERF domain
PRINTSPR003672.5E-11819IPR001471AP2/ERF domain
PRINTSPR003672.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSRPQQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETA EDAARAYDEA ARLVCGPTAR  60
TNFPYNANES TKFLSSASIA KLQRCHMTSL TTASKGPRTT KLEDKEENQI SPRIGNRGDG  120
EEGQSDRESS ASQQITKALE DEHIEQMIEE LLDYGSVEMC SFLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-17668467ATERF1
3gcc_A7e-17668467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341371.13e-95PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_006341372.13e-95PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-61ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM1B3Y48e-94M1B3Y4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000366341e-94(Solanum tuberosum)
STRINGPGSC0003DMT4000368171e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]