PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00021.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 306aa    MW: 34653.8 Da    PI: 9.5938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00021.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-082468345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+ E + + +a +++ ++   +W ++a++++ g++ ++++  + 
  Sme2.5_00021.1_g00013.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKSVNDVIRQYK 68
                             8********************************.*******99886 PP
2Myb_DNA-binding47.54.1e-15131175347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Sme2.5_00021.1_g00013.1 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                              7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0192073IPR017884SANT domain
SMARTSM007173.6E-102173IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-112378IPR009057Homeodomain-like
CDDcd001671.09E-72470No hitNo description
PfamPF002491.6E-72469IPR001005SANT/Myb domain
PROSITE profilePS5129419.89124180IPR017930Myb domain
SuperFamilySSF466895.31E-17125179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17127179IPR006447Myb domain, plants
SMARTSM007172.5E-12128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12129175IPR009057Homeodomain-like
CDDcd001671.83E-11131176No hitNo description
PfamPF002499.8E-13131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEILSPAPYL SNSSWFLDEG KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKSV  60
NDVIRQYKEL EDDVSRIEAG LITIPGYSTS PFTLEWGNSH SFDGYKQSYV VGGKRPLSNR  120
PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTINLN DNQTLSPDYQ KPTSPDQSTV ISQQPKSGAN AMHKMPFQWS  240
QLNNGTAMGF NSAEGSLFMS SLYGGNSYGN TKMQSQSLQR GAMHEPYFGP QSMHFQMQSA  300
HQYHQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-152090676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577712.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-147DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0V0IJC40.0A0A0V0IJC4_SOLCH; Putative transcription factor DIVARICATA-like
STRINGPGSC0003DMT4000780290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-103MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]