PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00021.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 35104.3 Da PI: 5.6092 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 2 | 41 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eE++llv+++kqlG++ W+ Ia++++ gR+++ +k++w+ Sme2.5_00021.1_g00007.1 2 WSEEEELLLVELHKQLGNK-WAEIAKRIP-GRSENAIKNHWN 41 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.246 | 1 | 48 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-16 | 2 | 41 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 1.9E-12 | 2 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.95E-14 | 2 | 52 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 2 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.95E-7 | 14 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MWSEEEELLL VELHKQLGNK WAEIAKRIPG RSENAIKNHW NATKRRQNSR RNKNKKNQQA 60 DDNKYERKKS LSYRPTVLQD YIRSKYFMNE DDSPPTATTF CGGGSHSGGG CNSTATTFAE 120 STPPYSEDDS PSLITHQTHD EEMNFMQSLF GNNNIVDDTE TRAVTQDLLN KSLSSGLNSF 180 GENSLTHYTQ ESIEARMVTQ DFLNKSLSSG LNSFGENSFP QSNVRNYMPD YSQHYPPDLY 240 LSYLLDGSNY PGFFGCGSMN NNNNNNNNTG IVMNHQGSSS GGGNMKEVDL MEMINSSNSQ 300 FTQAGTFNKT FF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 6e-16 | 2 | 47 | 8 | 53 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 6e-16 | 2 | 47 | 8 | 53 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322952.2 | 1e-118 | transcription factor MYB119 | ||||
TrEMBL | A0A2G2ZEF1 | 1e-101 | A0A2G2ZEF1_CAPAN; Uncharacterized protein (Fragment) | ||||
STRING | Solyc06g076840.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-18 | myb domain protein 119 |