PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00021.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 312aa    MW: 35104.3 Da    PI: 5.6092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00021.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-18241445
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                             W++eE++llv+++kqlG++ W+ Ia++++ gR+++ +k++w+
  Sme2.5_00021.1_g00007.1  2 WSEEEELLLVELHKQLGNK-WAEIAKRIP-GRSENAIKNHWN 41
                             *******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.246148IPR017930Myb domain
PfamPF002493.1E-16241IPR001005SANT/Myb domain
SMARTSM007171.9E-12246IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-14252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-17242IPR009057Homeodomain-like
CDDcd001676.95E-71444No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MWSEEEELLL VELHKQLGNK WAEIAKRIPG RSENAIKNHW NATKRRQNSR RNKNKKNQQA  60
DDNKYERKKS LSYRPTVLQD YIRSKYFMNE DDSPPTATTF CGGGSHSGGG CNSTATTFAE  120
STPPYSEDDS PSLITHQTHD EEMNFMQSLF GNNNIVDDTE TRAVTQDLLN KSLSSGLNSF  180
GENSLTHYTQ ESIEARMVTQ DFLNKSLSSG LNSFGENSFP QSNVRNYMPD YSQHYPPDLY  240
LSYLLDGSNY PGFFGCGSMN NNNNNNNNTG IVMNHQGSSS GGGNMKEVDL MEMINSSNSQ  300
FTQAGTFNKT FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A6e-16247853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A6e-16247853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322952.21e-118transcription factor MYB119
TrEMBLA0A2G2ZEF11e-101A0A2G2ZEF1_CAPAN; Uncharacterized protein (Fragment)
STRINGSolyc06g076840.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-18myb domain protein 119