PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00019.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 26280.3 Da PI: 7.5913 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 9 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +vk++G ++W+ a+ g ++R++k+c++rw +yl Sme2.5_00019.1_g00005.1 9 KGPWTEQEDLQLVFYVKMFGDRRWDFLAKVSGlkvgLKRSGKSCRLRWVNYL 60 79************************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+ + ++++ ++G++ W++Ia++++ gRt++++k++w++++ Sme2.5_00019.1_g00005.1 66 RGKLTPQEERQVIQLHSKYGNR-WSKIAEKLP-GRTDNEIKNYWRTHM 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.947 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 7 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 8 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 9 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 10 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.30E-8 | 11 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.765 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-25 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-12 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVQEDQMRKG PWTEQEDLQL VFYVKMFGDR RWDFLAKVSG LKVGLKRSGK SCRLRWVNYL 60 NPALKRGKLT PQEERQVIQL HSKYGNRWSK IAEKLPGRTD NEIKNYWRTH MRKQAQNEKK 120 NIKASSSPSS SNSSNCSSSS TNSPVVELLQ VAGENKIYEG DDQNMMVYSM DEIWKEVESS 180 EEIETSNNLL PSTTWDHYCP DNSQWMTHDH YYFDNHQDFS FFTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 6 | 115 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013044 | 3e-85 | BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165693.1 | 1e-115 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 1e-66 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A3Q7HWX1 | 1e-117 | A0A3Q7HWX1_SOLLC; Uncharacterized protein | ||||
STRING | XP_009798979.1 | 9e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-66 | myb domain protein 48 |
Publications ? help Back to Top | |||
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