PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00017.1_g00038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SBP | ||||||||
Protein Properties | Length: 188aa MW: 21479.4 Da PI: 8.2232 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.6e-41 | 74 | 149 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqve+Ce+dl ak+y++rhkvC++h+kapvvlv+gl++rfCqqCsrfhelsefD +krsCr+rL +hnerrrk+ Sme2.5_00017.1_g00038.1 74 CCQVEKCEVDLDGAKKYYKRHKVCQIHAKAPVVLVAGLSRRFCQQCSRFHELSEFDGTKRSCRQRLVGHNERRRKT 149 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-31 | 72 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.445 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.32E-37 | 73 | 151 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-33 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MATQIHCRPM KNRAAITMDL VEEDGEFEEE EEEGTVLNEE SSHLKRKKLN LGKKKGKNSD 60 FGGGLGVVVQ VKHCCQVEKC EVDLDGAKKY YKRHKVCQIH AKAPVVLVAG LSRRFCQQCS 120 RFHELSEFDG TKRSCRQRLV GHNERRRKTP LAIELEDNQS KQINGEARPH MDMTLPNRNA 180 IYTDDISE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 75 | 148 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579534.1 | 2e-74 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38740 | 2e-39 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A1U8HGD4 | 5e-73 | A0A1U8HGD4_CAPAN; squamosa promoter-binding-like protein 3 | ||||
STRING | Solyc07g062980.2.1 | 2e-67 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-36 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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