PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00014.1_g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29617.1 Da PI: 4.8666 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W + Ed+ll++++k+ G ++W++ ++ g+ R++k+c++rw +yl Sme2.5_00014.1_g00027.1 14 RGPWNKIEDDLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w++ Sme2.5_00014.1_g00027.1 67 RGNFTPQEEDAIIKLHQVLGNR-WSAIAAKLP-GRTDNEIKNIWHT 110 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.46 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.439 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRTPCCEKK GLKRGPWNKI EDDLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TPQEEDAIIK LHQVLGNRWS AIAAKLPGRT DNEIKNIWHT RLKKKMSDSQ 120 PQGTPKIKVE TSKSNEIFDA DTEPENSKDN SEISSPKTSI EIQQQPSSST LSSSSSEDSC 180 SNTNATSFES KDEIIWDNLL EVDDDIWSEV LWAPVDDNNL NLSLMEENYQ INSSFNDNWF 240 WDDLFTRSNE LMLELPEL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-77 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-77 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352742.1 | 1e-140 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LNC9 | 4e-73 | MYB13_ARATH; Transcription factor MYB13 | ||||
TrEMBL | M1BS18 | 1e-138 | M1BS18_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051682 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-74 | myb domain protein 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|