PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00013.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 337aa    MW: 38010.4 Da    PI: 6.0655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00013.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19127177256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p +   r+r++lg+++ ae Aa a+++a+ kl+ge
  Sme2.5_00013.1_g00022.1 127 LYRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYDNAEAAAYAYDRAAYKLRGE 177
                              69******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-17126186No hitNo description
PROSITE profilePS5103222.879127184IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22127185IPR016177DNA-binding domain
PfamPF008472.8E-13127177IPR001471AP2/ERF domain
SMARTSM003801.2E-35127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-30128185IPR001471AP2/ERF domain
PRINTSPR003672.0E-12128139IPR001471AP2/ERF domain
PRINTSPR003672.0E-12166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSYTDDEAAR IRSSLSQILL TSSTNTIDSI FSHCQEPDNQ VSTTSPVLEP LGSSVYLRQK  60
DLLQNFWEQN RTNITTPPQT PLHESIYSQK FWEQNPTNVT IPTTSTQIPF QESLYSQRYV  120
SPTKKTLYRG VRQRHWGKWV AEIRLPQNRT RVWLGTYDNA EAAAYAYDRA AYKLRGEYAR  180
LNFPNLRDPS ELGFGESAKM NALKNSVDAK IQAICQRVKR ERTKKGAKKF VERVKKDAKH  240
VDLDSPSCSS SLVGSESWSL SDVISQSSSD DGFLKSDNSP CSVLGDCPMG SENDDDSYFT  300
GITHQFERPM MESELEGCSL AGMPSFDPEL IWAVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19128184360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083452.11e-172ethylene-responsive transcription factor ERF061
TrEMBLA0A3Q7HL661e-170A0A3Q7HL66_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000149531e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-54ERF family protein