PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00013.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 320aa    MW: 36293.8 Da    PI: 8.8133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00013.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+t Ed+ll +++k+ G g+W+  +++ g+ R++k+c++rw +yl
  Sme2.5_00013.1_g00007.1 14 KGPWSTKEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61
                             79******************************99************97 PP

2Myb_DNA-binding53.46.1e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Sme2.5_00013.1_g00007.1  67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.956961IPR017930Myb domain
SuperFamilySSF466896.64E-2811108IPR009057Homeodomain-like
SMARTSM007177.3E-111363IPR001005SANT/Myb domain
PfamPF002497.8E-131461IPR001005SANT/Myb domain
CDDcd001675.39E-81661No hitNo description
PROSITE profilePS5129425.50862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565116IPR009057Homeodomain-like
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567111IPR001005SANT/Myb domain
CDDcd001672.01E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSTK EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HVIKKLKIAG  120
IQPKVAKKEP KKKPKIEKPT DKQKKNTKKK DQCLVQKTSD HTPQVVFVPK PIRISSGLLR  180
SSSVEDVALL GTSSLCCSDS PKKLLHPCQS LQKSTTLEES DEQLSIFLKS SSNIASPSDS  240
SEELAKNNKD INIITKDDEN IEGKIEEISF IPRALNLLFD EVLLDGFCDL SNESMLEKVY  300
EEYLQLISEK CYHLDDPMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-90HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-90HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085608.11e-167transcription factor MYB7-like
SwissprotQ388508e-62MYB5_ARATH; Transcription repressor MYB5
TrEMBLM1A5771e-158M1A577_SOLTU; Uncharacterized protein
STRINGSolyc08g008480.2.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-61myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]