PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00010.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 24063 Da PI: 9.3483 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.7e-18 | 80 | 129 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+W+AeIrdp + +r++lg+f ta++Aa+a+++ + +++ge Sme2.5_00010.1_g00006.1 80 FRGVRQRP-WGKWAAEIRDP-----HraQRVWLGTFLTAQDAARAYDKKAIEFRGE 129 8*******.**********7.....338*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 79 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-34 | 79 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.985 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 80 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.91E-29 | 80 | 138 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-21 | 80 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.9E-11 | 80 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MYTLAHKLTQ NQELHYMVSA LRHVVSGAGD GLANDEAAHL LWEVQNASGG SANSMPRRSI 60 NVELQNGKKK RRRRNTKKEF RGVRQRPWGK WAAEIRDPHR AQRVWLGTFL TAQDAARAYD 120 KKAIEFRGEK AKTNFPISQY TAVTDSPPIV VMDEKKESVQ VLNGGDVAVN GENKNSIMQN 180 GDDDDFWDTL EDDGLVKWLM TKDMFFSSFD FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 78 | 137 | 4 | 64 | ATERF1 |
3gcc_A | 1e-20 | 78 | 137 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | KKKRRR |
2 | 67 | 73 | KKKRRRR |
3 | 68 | 73 | KKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562221.1 | 2e-96 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A2G3D8S0 | 3e-95 | A0A2G3D8S0_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400010297 | 5e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 7e-27 | ERF domain protein 11 |