PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00010.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 481aa MW: 53575.1 Da PI: 5.0191 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.5 | 6.8e-36 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl k+ye+++d++++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk Sme2.5_00010.1_g00004.1 10 FLLKTYELVDDAANNDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFK 86 9****************************************************************999.........********* PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkkse 103 +g+kell+ i+r+k++ Sme2.5_00010.1_g00004.1 87 RGQKELLTAIHRRKTT 102 *************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-37 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.3E-33 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-58 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-30 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.8E-19 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.8E-19 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.8E-19 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.238.10 | 8.0E-46 | 309 | 451 | IPR011992 | EF-hand domain pair |
SuperFamily | SSF47473 | 2.46E-41 | 310 | 451 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 16.076 | 319 | 354 | IPR002048 | EF-hand domain |
Pfam | PF13499 | 7.1E-16 | 322 | 384 | IPR002048 | EF-hand domain |
CDD | cd00051 | 4.66E-23 | 323 | 385 | No hit | No description |
SMART | SM00054 | 1.7E-7 | 323 | 351 | IPR002048 | EF-hand domain |
PROSITE pattern | PS00018 | 0 | 332 | 344 | IPR018247 | EF-Hand 1, calcium-binding site |
PROSITE profile | PS50222 | 14.876 | 355 | 390 | IPR002048 | EF-hand domain |
SMART | SM00054 | 9.3E-8 | 359 | 387 | IPR002048 | EF-hand domain |
PROSITE pattern | PS00018 | 0 | 368 | 380 | IPR018247 | EF-Hand 1, calcium-binding site |
PROSITE profile | PS50222 | 13.425 | 392 | 427 | IPR002048 | EF-hand domain |
Pfam | PF13499 | 3.7E-8 | 395 | 450 | IPR002048 | EF-hand domain |
CDD | cd00051 | 6.08E-11 | 396 | 451 | No hit | No description |
SMART | SM00054 | 0.071 | 396 | 424 | IPR002048 | EF-hand domain |
PROSITE pattern | PS00018 | 0 | 405 | 417 | IPR018247 | EF-Hand 1, calcium-binding site |
PROSITE profile | PS50222 | 5.643 | 428 | 451 | IPR002048 | EF-hand domain |
SMART | SM00054 | 36 | 432 | 458 | IPR002048 | EF-hand domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MSQRTAPAPF LLKTYELVDD AANNDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIHRRK TTTSTPAGGK SVAAGTSASP 120 DNSGDDIGSS STSSPDSKNP GSVETPGKLS QFMDLSDENE KLKKDNQMLS SELVRAKKQC 180 DELVDFLSQY VKVAPDMINR IMSQGTPSGS SLEDLVKEAG VVKDLEKQVS CNDDDHEDDD 240 EKGDTLKLFG VLLKEKKKKR GPDENIDSCG ARGKLMKTVE YNGPWMKMSS VAGESSKASV 300 SRKFSRRETR QRHPGLTQQK RKEIKEAFEL FDTDGSGTID ARELNVAMRA LGFEMTEEHV 360 EQMIADVDKD GSGAIDFDEF VHMMTAKIGE RDTKEDLAKA FNIIDQDKTG KISATDIQKI 420 AKELGENFTA REIQEMIEAA DRDCNGKVDV DFTLSDSTCG IPLGMSSSLF TDRGSWVFLY 480 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kf9_A | 1e-55 | 315 | 449 | 1 | 135 | Caltractin |
3kf9_C | 1e-55 | 315 | 449 | 1 | 135 | Caltractin |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X55347 | 0.0 | X55347.1 Tomato mRNA for heat stress transcription factor HSF24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308379.1 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 0.0 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0V0I942 | 1e-179 | A0A0V0I942_SOLCH; Putative heat shock factor protein HSF24-like | ||||
TrEMBL | A0A3Q7FBZ5 | 1e-179 | A0A3Q7FBZ5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090820.2.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9991 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 6e-78 | heat shock factor 4 |
Publications ? help Back to Top | |||
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