PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00009.1_g00032.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 346aa    MW: 38220.1 Da    PI: 4.8084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00009.1_g00032.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19134184155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Sme2.5_00009.1_g00032.1 134 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIRLRG 184
                              59********.**********72....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.38E-32134192No hitNo description
SuperFamilySSF541712.62E-21135192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-30135192IPR001471AP2/ERF domain
PfamPF008473.9E-12135184IPR001471AP2/ERF domain
PROSITE profilePS5103223.551135192IPR001471AP2/ERF domain
SMARTSM003803.4E-36135198IPR001471AP2/ERF domain
PRINTSPR003673.8E-10136147IPR001471AP2/ERF domain
PRINTSPR003673.8E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDQQTMLSSG VKYTEHRKQI TMVRPSAPAG FTGRRRSSEM NAGGPRVVRI TVTDADATDS  60
SSDEAEEGFY GRQRVRKFVN EVRIEQSSNC NGSVNEVLRN GSSSGTAVTA APPKRRKKNA  120
GATAASKLKV NNVKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE AAMVYDHAAI  180
RLRGPDAPTN FATPPATAKT SCSSYNSGEE SHNDQRSPKS VLRCASTSFD ESQNNEEAEA  240
ESLPILPSEE SVKKNSDSRD ENDISMPETF CDFPPFESFF PDDLFQFENP VTISDLFEPT  300
TLPDCNNMLT LGSSTTDFGF GSSSWPEDDY FQDFGDIFGS DPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-19134191159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343893.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLM1AWS30.0M1AWS3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000320580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-34cytokinin response factor 4