PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00008.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 29391 Da PI: 8.4159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp + + +r++lg+f tae+Aa a+++a++k++g Sme2.5_00008.1_g00028.1 92 QYRGVRERP-WGKWAAEIRDP---N-KaARVWLGTFHTAEDAAIAYDEAALKFKG 141 69****888.**********9...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 91 | 150 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-37 | 92 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.236 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 92 | 150 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.6E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-27 | 98 | 150 | No hit | No description |
PRINTS | PR00367 | 6.6E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDRTRHGKRP YESKDNNNNN MYSSGRSQHD MSTMVSVLSQ VIGNSSSSSS SSSASFEHHT 60 PLVTLNHRST AAMQNQFPQF NQQGNEKRRR RQYRGVRERP WGKWAAEIRD PNKAARVWLG 120 TFHTAEDAAI AYDEAALKFK GTKAKLNFPE RVQSKTDQFG TPYLITTSHD QFSLGDVHRY 180 ARNGSNNYNT DLNFGVSSQS IYRQSGFEPS FVSESPSITS LVQQAEPSYN QQQEYENVVT 240 CSSSWLFDSS WEEFEDPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-24 | 91 | 152 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-24 | 91 | 154 | 4 | 68 | ATERF1 |
3gcc_A | 1e-24 | 91 | 154 | 4 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-69 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016578393.1 | 9e-94 | PREDICTED: ethylene-responsive transcription factor ERF114-like isoform X2 | ||||
Swissprot | Q9FH54 | 1e-47 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A1U8HB76 | 2e-92 | A0A1U8HB76_CAPAN; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G2XZQ3 | 2e-92 | A0A2G2XZQ3_CAPAN; ethylene-responsive transcription factor ERF114-like isoform X2 | ||||
STRING | Solyc06g068830.1.1 | 5e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 7e-28 | ERF family protein |
Publications ? help Back to Top | |||
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