PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00007.1_g00031.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 1028aa MW: 114303 Da PI: 7.1708

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00007.1_g00031.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	1.8e-31	876	932	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF Sme2.5_00007.1_g00031.1 876 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 932 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14438	1.4E-25	55	138	IPR025852	Ataxin 2, SM domain
Pfam	PF06741	1.0E-24	195	265	IPR009604	LsmAD domain
SMART	SM01272	9.6E-37	195	266	IPR009604	LsmAD domain
SMART	SM00521	1.4E-33	874	935	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.838	875	935	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.1E-26	877	932	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-21	878	900	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-21	909	932	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence Send to blast
MQQAVLPRSF ANGFGSRKGE KEMGTRLESR MQSTKTASSK STAVGKRGSY ESPSHDRLVY 60 FSTCLLGHQV EVQVVDGSVF SGIFHATSAD KDFGIILKMA RLIKDGSQGM KNTPESLIKP 120 PAKTLIIPGK ELVQVIAKEL LTDSCISQSR HGEIERQLER WVPDDDALEC PELDNIFDGH 180 WNRGWDQFQA NETLFGVKST FNEELYTTKL EKGPQMRELE KEALRIAREI ENEETRDLHL 240 AEERGIQLHG NVEVDEETRF SAVVRRVDDS GYGDCEDTLL DSCNDETFQC ISSSSMGQSF 300 TGKSVGEVVD AVEVSSRSSY VECDLVVNEV GTNRLVKTTV CQQIERAMEE IRHRNEDELQ 360 SSQLSTSRDG YQTYYDGHSQ QASTEYVPQS ASKMDESSPL GGTRSRSVNM MELVAMKRRQ 420 LAEGAHTSIP EGEFFLRFLN VDSKSSLRVE KQTLDKGVSS MDVSALSPLP ECQEKITGNF 480 SEKGPVASSK SRDNARSANS CVRPSSSALS SIDRAGASSS NGLSRSSSVS SLSSEKSTKS 540 TLNPHAKEFK FNPNAKSFVP SPTLRPASPI SDNSFYYPAG MAAMPHMHGM SMGIGVGPSF 600 AGHQSVVFNP QGTPAPQPYF HPSGPQYGQQ MMIGHPRQVV YMPTYPPKSC HLIFNGIRKP 660 VTVSKRRVMQ PLYLDCRLVM QYIRNHHTKE EESIDLFLLM CIRLVAQPFA DMGNKLLTVD 720 CMDQLSVQQM STFPGPQNSK EMNFHFQDQD SSSTQSTSQS CPEAANEGER KIHGKSNIHL 780 LAGSFRSSGM SDDSQSVSSQ EHGWTYDTYQ KNFAVEPFHY PDPYYHGLVA AYGNRTMCAL 840 PMPPVGSLPF SFLQVQSQML GTASPRVPLP LDLKQDEPIF VNAKQYQAIL RRRQYRARLE 900 AQNKLSKGRK PYLHESRHRH ALNRARGPGG RFVNMKKTRE SKSTDLINGQ DNQVPEELQL 960 NTKMLEHDVH QSGSYSRPAY SGITSSSNGH AIYHHQPFKY SALVCTGGAS EQDKEKKDNI 1020 SSPCLSSF

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence Send to blast

MQQAVLPRSF ANGFGSRKGE KEMGTRLESR MQSTKTASSK STAVGKRGSY ESPSHDRLVY  60
FSTCLLGHQV EVQVVDGSVF SGIFHATSAD KDFGIILKMA RLIKDGSQGM KNTPESLIKP  120
PAKTLIIPGK ELVQVIAKEL LTDSCISQSR HGEIERQLER WVPDDDALEC PELDNIFDGH  180
WNRGWDQFQA NETLFGVKST FNEELYTTKL EKGPQMRELE KEALRIAREI ENEETRDLHL  240
AEERGIQLHG NVEVDEETRF SAVVRRVDDS GYGDCEDTLL DSCNDETFQC ISSSSMGQSF  300
TGKSVGEVVD AVEVSSRSSY VECDLVVNEV GTNRLVKTTV CQQIERAMEE IRHRNEDELQ  360
SSQLSTSRDG YQTYYDGHSQ QASTEYVPQS ASKMDESSPL GGTRSRSVNM MELVAMKRRQ  420
LAEGAHTSIP EGEFFLRFLN VDSKSSLRVE KQTLDKGVSS MDVSALSPLP ECQEKITGNF  480
SEKGPVASSK SRDNARSANS CVRPSSSALS SIDRAGASSS NGLSRSSSVS SLSSEKSTKS  540
TLNPHAKEFK FNPNAKSFVP SPTLRPASPI SDNSFYYPAG MAAMPHMHGM SMGIGVGPSF  600
AGHQSVVFNP QGTPAPQPYF HPSGPQYGQQ MMIGHPRQVV YMPTYPPKSC HLIFNGIRKP  660
VTVSKRRVMQ PLYLDCRLVM QYIRNHHTKE EESIDLFLLM CIRLVAQPFA DMGNKLLTVD  720
CMDQLSVQQM STFPGPQNSK EMNFHFQDQD SSSTQSTSQS CPEAANEGER KIHGKSNIHL  780
LAGSFRSSGM SDDSQSVSSQ EHGWTYDTYQ KNFAVEPFHY PDPYYHGLVA AYGNRTMCAL  840
PMPPVGSLPF SFLQVQSQML GTASPRVPLP LDLKQDEPIF VNAKQYQAIL RRRQYRARLE  900
AQNKLSKGRK PYLHESRHRH ALNRARGPGG RFVNMKKTRE SKSTDLINGQ DNQVPEELQL  960
NTKMLEHDVH QSGSYSRPAY SGITSSSNGH AIYHHQPFKY SALVCTGGAS EQDKEKKDNI  1020
SSPCLSSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	876	936	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162224.1	0.0	PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2
TrEMBL	A0A3Q7FUC8	0.0	A0A3Q7FUC8_SOLLC; Uncharacterized protein
STRING	Solyc03g121950.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3166	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	6e-39	nuclear factor Y, subunit A3