PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00007.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 358aa    MW: 40049.1 Da    PI: 6.6634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00007.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  Sme2.5_00007.1_g00018.1 14 RGLWSPEEDEKLVKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                             788*******************************************97 PP
2Myb_DNA-binding44.92.6e-1467110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+++++E  l+++++   G++ W+ Ia++++ gRt++++k++w++
  Sme2.5_00007.1_g00018.1  67 RGSFSPQEAALIIELHSIIGNR-WAQIAKYLP-GRTDNEVKNFWNS 110
                              899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-27564IPR009057Homeodomain-like
PROSITE profilePS5129424.836965IPR017930Myb domain
SuperFamilySSF466891.2E-2911108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002499.0E-161461IPR001005SANT/Myb domain
CDDcd001674.51E-121761No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.64666116IPR017930Myb domain
SMARTSM007178.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1367110IPR001005SANT/Myb domain
CDDcd001673.45E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLVKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSIIGNRWA QIAKYLPGRT DNEVKNFWNS SLKKKLNLSH  120
GTLSDLSNIF PNNNANLITN PNPNPSFDDF NSFNPNVPIT NSFMSSTNPP LILDQMNNIN  180
HNGDLNVINQ VVHNSLPLAF DSISNDPTWF NFNYPKHPQH VLEYDPSVIQ QDNSINSMLT  240
SNISLNCTNG ENFMDPTNVT DNIHQDSMIA PLLTPKFSEM IKGNEGGILE STPILSQPID  300
SMMINSLPCT FLTNYTMNPY NNVDMSSSLS PSISSASSSL SALSCNQFMM NPSTTWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-160HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069539.10.0transcription factor MYB26-like
TrEMBLA0A2G3D0J61e-175A0A2G3D0J6_CAPCH; Transcription factor MYB26
STRINGSolyc03g121740.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-78myb domain protein 26