PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00007.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 536aa    MW: 58279.2 Da    PI: 8.8658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00007.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-0596118123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Sme2.5_00007.1_g00011.1  96 FVCEICSKGFQRDQNLQLHRRGH 118
                              89*******************88 PP
2zf-C2H213.30.00025172194123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  Sme2.5_00007.1_g00011.1 172 WKCEKCSKRYAVQSDWKAHSKTC 194
                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-695118No hitNo description
SMARTSM003550.03696118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88796118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355250137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-6167192No hitNo description
SMARTSM00355130172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMMKGLMNQQ AQVPVAVVEE NMSNLTSASG EASVSSSNRN DNNNIYPPQQ YNFAPPNQQT  60
QPTQQIKKKR NQPGNPDPEA EVIALSPKTL MATNRFVCEI CSKGFQRDQN LQLHRRGHNL  120
PWKLKQRASK EVRKKVYVCP ETSCVHHDPA RALGDLTGIK KHFCRKHGEK KWKCEKCSKR  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ  240
AGSSTFQMNF QFQPFNQEIP ATFSLKKEQQ TGFSLRPEIP PWLLVGGGPG AGPGPTPPPP  300
IDLSSSIFQS SRFSDQDYTQ NHHQQDFMNP NPSLSGPTSG AMVSPHISAT ALLQKAAQMG  360
ATMSNKASTV SAVSSGPGPA MLMRPHQIHV SATAAAESVS NATDFGLNLS SREDSSSFFN  420
SLASYGNKAA TPSASVVAPA TIPLSSAPHL SPSSLQDMVN SFSSTNPTGF EGSNFDDPFS  480
SIGILNPKHD NGGNDGMTKD FLGLRPLSHN DIFNIAGLVN TPSTENQSQN HKTWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35168229364Zinc finger protein JACKDAW
5b3h_F3e-35168229364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLKQRASKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342975.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_006342976.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR950.0M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]