PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00004.1_g00024.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 303aa    MW: 34012.9 Da    PI: 7.0121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00004.1_g00024.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
  Sme2.5_00004.1_g00024.1 14 KGPWSPEEDAKLKEYIDKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding37.36.2e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Sme2.5_00004.1_g00024.1  69 GEFSDEEDRVICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.633962IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007177.6E-121364IPR001005SANT/Myb domain
PfamPF002494.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241569IPR009057Homeodomain-like
CDDcd001674.69E-91662No hitNo description
PROSITE profilePS5129421.88863117IPR017930Myb domain
SMARTSM007176.7E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
CDDcd001678.12E-870113No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF  120
VSSSHKIRPL NHHHYHHQHQ IPTNCYNNYS PQISLLQASS LLHSSNYNTT PTFPCYEASI  180
PSTIPLSTSI LSTGASSSCT SGIIASTFHE SNLAGPTTSS DESYGVSNLD FHSYMYNIDG  240
EGKSISGNNN GDCYVDEQQN PLDYSSLEEI KELISTNHVS SNDNHSFLLD HEIKTEEKVM  300
MYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2285911e-142JQ228591.1 Nicotiana tabacum ntrax mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345703.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_006354368.10.0PREDICTED: transcription factor RAX2
TrEMBLM0ZPG21e-180M0ZPG2_SOLTU; Uncharacterized protein
TrEMBLM0ZX571e-180M0ZX57_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000050850.0(Solanum tuberosum)
STRINGPGSC0003DMT4000099260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-79myb domain protein 36