PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00003.1_g00061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRF | ||||||||
Protein Properties | Length: 414aa MW: 45641.9 Da PI: 8.9876 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 67.7 | 1.5e-21 | 115 | 158 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+++v++g+k+C H+hrg rsrk++e+ Sme2.5_00003.1_g00061.1 115 DPEPGRCRRTDGKKWRCKKDVIPGQKYCGPHMHRG-RRSRKPVEP 158 79*********************************.689998886 PP | |||||||
2 | WRC | 59.8 | 4.3e-19 | 305 | 343 | 2 | 40 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 +ep rCrR+DGKkWRCs++v++ +k+CE H+hrg +r++ Sme2.5_00003.1_g00061.1 305 TEPQRCRRSDGKKWRCSKKVVPCQKYCETHMHRGANRKK 343 79**********************************987 PP | |||||||
3 | QLQ | 43.7 | 8.5e-16 | 51 | 86 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s FTaaQ+q+L Q+ ++Ky+ +++PvP +L ++i+ Sme2.5_00003.1_g00061.1 51 SLFTAAQFQELQLQAVIFKYIFSGLPVPFHLFFIIW 86 68********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-6 | 51 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.524 | 52 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-10 | 53 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.732 | 115 | 159 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.0E-18 | 116 | 155 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 20.622 | 304 | 348 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-16 | 306 | 343 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MASFNAMTQG KGKEDEITKK ERSPPSIELS LGYGGSSHVI EEEEKSAKSK SLFTAAQFQE 60 LQLQAVIFKY IFSGLPVPFH LFFIIWSSVS SSLVDGGIYK LYPTLGRFDY SSMTDPEPGR 120 CRRTDGKKWR CKKDVIPGQK YCGPHMHRGR RSRKPVEPSE YVMRSDDTSI GSKRSKLYAS 180 SDDPGSKCAP ASSKTSCLSS TSRNYQNNSI EYSSATPRFS NSGNGSEKQD SHMTCNIKDT 240 TNCIKTPSFI AGDNADSKNI DFSHISASKT NQNHNCGDAR NDGALVPIFG TSTKSDLQPT 300 TGSETEPQRC RRSDGKKWRC SKKVVPCQKY CETHMHRGAN RKKLASVSVV FPPSKPSSYM 360 FCPPENDGTG RNLNSSLSIY AIAARQNITD DDSYSNSISD ATTITDEIPA FVSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339771.1 | 0.0 | PREDICTED: growth-regulating factor 9 | ||||
TrEMBL | M1AYU1 | 0.0 | M1AYU1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033246 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7798 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 3e-33 | growth-regulating factor 9 |