PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00003.1_g00040.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 375aa    MW: 40520.1 Da    PI: 8.4188
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00003.1_g00040.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.64e-691373003154
                   DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaask 73 
                               g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++               +++ +k
  Sme2.5_00003.1_g00040.1 137 GGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCNTHVKSTWVPAAKRRERQQQLSALQQQQQNQQqnqqqtqllslradhHSNIPK 222
                              5789**************************************************99988877666678899999998877777778 PP

                   DUF702  74 rkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              r+re+   ++s+l++t+l++ +s  el  + +P+ev+s+avfrcv+vs++dd+++++aY+tav+igGh+fkGiLydqG+e+
  Sme2.5_00003.1_g00040.1 223 RPREN--PSSSSLACTRLPNISSGLELGGH-FPSEVNSQAVFRCVKVSAIDDADDQYAYHTAVNIGGHLFKGILYDQGPES 300
                              88876..7889999*******999888876.************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-67139299IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-26141183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-26250298IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSGFFTLGGS SGGGGNKGQQ NDEQDQLGTN SLLLFKDNEI YNKGFELWQQ YYQLHQQRAH  60
PHHHQQQDVD FSVGVGPSCN RRIISTGSSS SSGGNNNIVG GTDDHNHNIN NHYTNSSSYR  120
SSSGFRVMRP SSSGSGGGGI NCQDCGNQAK KDCSHLRCRT CCKSRGFQCN THVKSTWVPA  180
AKRRERQQQL SALQQQQQNQ QQNQQQTQLL SLRADHHSNI PKRPRENPSS SSLACTRLPN  240
ISSGLELGGH FPSEVNSQAV FRCVKVSAID DADDQYAYHT AVNIGGHLFK GILYDQGPES  300
RYSGGGGGGE SSSGSGAAQQ PLNFITGATT STSAAATTSH QQHQQAAVTM YDPSVYPTPI  360
TAFLAGTQFF PPPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238315.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3Q7G7S00.0A0A3Q7G7S0_SOLLC; Uncharacterized protein
STRINGSolyc04g080970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-64Lateral root primordium (LRP) protein-related