PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00003.1_g00037.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28469.2 Da    PI: 9.4783
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00003.1_g00037.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.7e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sstgkl+e++s
  Sme2.5_00003.1_g00037.1  9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDAQVSIVMISSTGKLHEFIS 59
                             68***********************************************86 PP
2K-box942.5e-3179177199
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              yqk+ g++ +++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qi++ +kk ++
  Sme2.5_00003.1_g00037.1  79 YQKTIGVDIWTSHYEKMQEQLRKLKDVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKIIRERKYKVISNQIDTFKKKVRN 164
                              78888999****************************************************************************** PP

                    K-box  87 lqeenkaLrkkle 99 
                              ++e++++L  +++
  Sme2.5_00003.1_g00037.1 165 VEEIHRNLLLEFD 177
                              *******987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
CDDcd002655.89E-37288No hitNo description
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-333103IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2090175IPR002487Transcription factor, K-box
PROSITE profilePS5129716.02392182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AQVSIVMISS TGKLHEFISP  60
SITPHLWDFT GTKQLFDLYQ KTIGVDIWTS HYEKMQEQLR KLKDVNRNLR KEIRQRMGES  120
LNDLNYEQLE ELMENVDNSL KIIRERKYKV ISNQIDTFKK KVRNVEEIHR NLLLEFDARQ  180
EDPYGGLVEQ EGDYNSVLGA RILALRLQPN NNHHHHHLHN GGDHHHHHHL HSGGGSDITT  240
FALA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15170170MEF2C
5f28_B2e-15170170MEF2C
5f28_C2e-15170170MEF2C
5f28_D2e-15170170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534040.0HQ853404.1 Solanum pyracanthum MADS box transcription factor (DEF) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311863.11e-145floral homeotic protein PMADS 1
SwissprotQ074721e-129MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A1U8GIB21e-143A0A1U8GIB2_CAPAN; floral homeotic protein PMADS 1
TrEMBLD7RNT61e-143D7RNT6_CAPAN; PAP3
STRINGSolyc04g081000.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]