PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00001.1_g00051.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 470aa    MW: 52956.2 Da    PI: 8.4639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00001.1_g00051.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-11421468347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              +W++ E++ l  +v+++G g+Wk I  t      gRt  ++k++w++ 
  Sme2.5_00001.1_g00051.1 421 KWSALEEDTLRTGVQKYGIGNWKVILDTYRdifSGRTSGDLKDKWRNM 468
                              8*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.768414470IPR017930Myb domain
SuperFamilySSF466894.52E-15416469IPR009057Homeodomain-like
SMARTSM007178.3E-4418470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-11420469IPR009057Homeodomain-like
CDDcd116609.98E-18420469No hitNo description
PfamPF002496.3E-8421468IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLLRMDIDID ISNWILEFIL RHPLDDGILN ALIHTLPLPN DKPNLKRALL VRKIESEISD  60
GSVTEKILEI LELIEELNNQ EGIEASEVMK AAYCAVAVEC TVKFLSCEGA GSDKGKYFEA  120
VRRIWKRRIN LMEKREDVGF VSEELWSWRD EIEAALWDDR CSVRLIKSIK GVDAVEAVKA  180
FVSKAKESIG SPFLEVVAET YRSDAKMKAF FEGVNKEGTC RKNDREVHKG NASTRKKHVA  240
FKRTRGSSAE KSGGVRISDS IESEPEASGG QDGLLPSAEI QKAQRALKLS SLELRAMVKD  300
PLPDALRLAE TLSSVARDNT GHQPAENNSD RAPPPIASSS RMVQARGENC EVQHNCHHKP  360
DRVNRNNAAH PFEWDDFFDE VNEGAPSAAN RVTLPSPKRT KVSPLKKYEF KKVTLRRKPR  420
KWSALEEDTL RTGVQKYGIG NWKVILDTYR DIFSGRTSGD LKDKWRNMMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350882.10.0PREDICTED: uncharacterized protein LOC102603861
TrEMBLA0A0V0IEV80.0A0A0V0IEV8_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000781280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-23TRF-like 5