PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00001.1_g00049.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 635aa    MW: 72410.3 Da    PI: 6.5118
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00001.1_g00049.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3551.2e-1082616312374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cAea +s +++   ++L+++++++sp gd+++Rla +f++AL+ar a+         ++++t++ + ++ l+a++++  +
  Sme2.5_00001.1_g00049.1 261 TSLLTRCAEAAASYNTKTFIEVLKKIRQHSSPFGDATERLAYCFANALEARFAG------GDATVTTTKKISAADFLKAYQVYITA 340
                              689***************************************************......33344444456699************ PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+ ++s++ aN+ I + ++++ rvHiiDf+i +G+QWp++++  + Rp+gpp+lRiTg++ p++g   +e++eetg+rL++++++
  Sme2.5_00001.1_g00049.1 341 CPFKRMSNIFANKSIAKLTSESPRVHIIDFGILYGFQWPCIIHGVSLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLEEYCKR 426
                              *****************************************************************9******************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFl 254
                              ++vpfe+++ +ak++++++le+L+++++E ++Vn+ ++l+++lde+v ++    +rd+vL+l+++++P+ +v+    a +n++ F 
  Sme2.5_00001.1_g00049.1 427 FNVPFEYKA-IAKKWDEIKLEDLDINTDEIVVVNCLYRLKNVLDETVVTHGnrnPRDAVLNLIREINPHYFVHGIVSAMYNASFFT 511
                              *********.7**********************************9887655669******************************* PP

                     GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW+ r + aGF+++pl+++++k++k+ 
  Sme2.5_00001.1_g00049.1 512 TRFREALFHFSSQFDMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSVRNQIAGFRQLPLDQDIVKEVKTK 597
                              ************************************************************************************** PP

                     GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++++   + v+e+s+++++gWk+r ++++S+W+
  Sme2.5_00001.1_g00049.1 598 VKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 631
                              *****888*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.464234611IPR005202Transcription factor GRAS
PfamPF035144.1E-106261631IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MNTSTHFPGD HRSSDGIEFC HRFSLNNNHI EGGVNDVVCF SSRRPSEEEI VVGSGNDRTV  60
VQGDYFDGVF KYIHQMLMDD QDDRPCMFQD CIALQAAERS FYEALNPPSV HCSTTDAVNQ  120
FVESTFNYDL DGVYSSGLNN YQQVTASGDD FIPPNANSCY QESDGNKKHT REENGDSSKG  180
RNSKQFASDG TEDDKTEEHY DKALLCPGLN PSFYENRSKS ATSWDNAAWD KQKSCHIKQS  240
KRGRPRGSKK GVKKNEVVDL TSLLTRCAEA AASYNTKTFI EVLKKIRQHS SPFGDATERL  300
AYCFANALEA RFAGGDATVT TTKKISAADF LKAYQVYITA CPFKRMSNIF ANKSIAKLTS  360
ESPRVHIIDF GILYGFQWPC IIHGVSLRPG GPPKLRITGI DFPQPGFRPA ERVEETGRRL  420
EEYCKRFNVP FEYKAIAKKW DEIKLEDLDI NTDEIVVVNC LYRLKNVLDE TVVTHGNRNP  480
RDAVLNLIRE INPHYFVHGI VSAMYNASFF TTRFREALFH FSSQFDMFEA TMPREDEGRM  540
MFEQEVFGRD IMNVIASEGA ERVERPESYK KWSVRNQIAG FRQLPLDQDI VKEVKTKVKM  600
FYHADFLVDE DSNWMLQGWK GRIMYALSVW EPLHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-452606305374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350886.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-162SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CZT40.0M1CZT4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-165SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]