PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00001.1_g00045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 247aa    MW: 27839.9 Da    PI: 4.8009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00001.1_g00045.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-2198148155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +grW+AeIrdp     +  kr++lg+++t+eeAa  +++a+ kl+g
  Sme2.5_00001.1_g00045.1  98 KKFRGVRQRP-WGRWAAEIRDP-----NlgKRVWLGTYDTPEEAATVYDKAAVKLKG 148
                              59********.**********9.....556************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.4E-964247IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.50E-3298158No hitNo description
Gene3DG3DSA:3.30.730.103.6E-3099156IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2299157IPR016177DNA-binding domain
PROSITE profilePS5103223.81599156IPR001471AP2/ERF domain
SMARTSM003801.9E-3999162IPR001471AP2/ERF domain
PfamPF008476.0E-1399148IPR001471AP2/ERF domain
PRINTSPR003677.7E-10100111IPR001471AP2/ERF domain
PRINTSPR003677.7E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAETSTPVIK FTQHIVTTNK HVCEYTEKPN SETKVSQRVV RIILTDADAT DSSDDEGRNT  60
IRRVKRHVTE INLVPSPKLT GERKRRSVLP DSDVTRRKKF RGVRQRPWGR WAAEIRDPNL  120
GKRVWLGTYD TPEEAATVYD KAAVKLKGPD AVTNFPVLTT AEVTVAVTET ETESATDGGD  180
KSENDVALSP TSVLRNDDFA PFDNLGFDAF GFDVDSFFRL PDFSMSEKYY GEEFGEFDFD  240
DFALEAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1998157161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1998157464ATERF1
3gcc_A1e-1998157464ATERF1
5wx9_A5e-19991561472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18398KRRSVLPDSDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
GenBankLEU892570.0U89257.1 Lycopersicon esculentum DNA-binding protein Pti6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350890.11e-130PREDICTED: pathogenesis-related genes transcriptional activator PTI6
SwissprotO046821e-128PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLM1CZU01e-129M1CZU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782941e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-34cytokinin response factor 4