PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00001.1_g00045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27839.9 Da PI: 4.8009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.9e-21 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp + kr++lg+++t+eeAa +++a+ kl+g Sme2.5_00001.1_g00045.1 98 KKFRGVRQRP-WGRWAAEIRDP-----NlgKRVWLGTYDTPEEAATVYDKAAVKLKG 148 59********.**********9.....556************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.4E-96 | 4 | 247 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.50E-32 | 98 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-30 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.815 | 99 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-39 | 99 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAETSTPVIK FTQHIVTTNK HVCEYTEKPN SETKVSQRVV RIILTDADAT DSSDDEGRNT 60 IRRVKRHVTE INLVPSPKLT GERKRRSVLP DSDVTRRKKF RGVRQRPWGR WAAEIRDPNL 120 GKRVWLGTYD TPEEAATVYD KAAVKLKGPD AVTNFPVLTT AEVTVAVTET ETESATDGGD 180 KSENDVALSP TSVLRNDDFA PFDNLGFDAF GFDVDSFFRL PDFSMSEKYY GEEFGEFDFD 240 DFALEAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 98 | 157 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 98 | 157 | 4 | 64 | ATERF1 |
3gcc_A | 1e-19 | 98 | 157 | 4 | 64 | ATERF1 |
5wx9_A | 5e-19 | 99 | 156 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 98 | KRRSVLPDSDVTRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. | |||
GenBank | LEU89257 | 0.0 | U89257.1 Lycopersicon esculentum DNA-binding protein Pti6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350890.1 | 1e-130 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | O04682 | 1e-128 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | M1CZU0 | 1e-129 | M1CZU0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078294 | 1e-130 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-34 | cytokinin response factor 4 |